1. * Package: sci-mathematics/Macaulay2-1.4-r1
  2. * Repository: gentoo
  3. * Maintainer: tomka@gentoo.org sci-mathematics@gentoo.org
  4. * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
  5. * FEATURES: sandbox test userpriv usersandbox
  6. Installed LAPACK for library directory lib64
  7. [1] reference *
  8. Installed BLAS for library directory lib64
  9. [1] reference *
  10. Installed CBLAS for library directory lib64
  11. [1] gsl
  12. [2] reference *
  13. >>> Unpacking source...
  14. >>> Unpacking factory-3-1-1.tar.gz to /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
  15. >>> Unpacking libfac-3-1-1.tar.gz to /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
  16. >>> Unpacking gc-7.2alpha5-2010-09-03.tar.gz to /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
  17. >>> Unpacking Macaulay2-1.4-r12617-src.tar.bz2 to /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
  18. >>> Source unpacked in /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
  19. >>> Preparing source in /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work/Macaulay2-1.4-r12617 ...
  20. * Applying 1.4-paths-of-external-programs.patch ...
  21. [ ok ]
  22. * Applying 1.4-pari-2.5-compat.patch ...
  23. [ ok ]
  24. * Applying 1.4-comint-use-fields.patch ...
  25. [ ok ]
  26. * Applying 1.4-fix-emacs-syntax-table.patch ...
  27. [ ok ]
  28. * Running eautoreconf in '/tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work/Macaulay2-1.4-r12617' ...
  29. * Running aclocal ...
  30. [ ok ]
  31. * Running autoconf ...
  32. [ ok ]
  33. * Running autoheader ...
  34. [ ok ]
  35. >>> Source prepared.
  36. >>> Configuring source in /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work/Macaulay2-1.4-r12617 ...
  37. relevant environment variable values, if any:
  38. CC=x86_64-pc-linux-gnu-gcc
  39. CXX=x86_64-pc-linux-gnu-g++
  40. CPPFLAGS= -I/usr/include/frobby
  41. CFLAGS=-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches
  42. FCFLAGS=-O2 -pipe -ggdb -march=native -frecord-gcc-switches
  43. CXXFLAGS=-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches
  44. LDFLAGS=-Wl,-O1 -Wl,--as-needed
  45. checking for gmake... gmake
  46. checking for wget... wget
  47. checking for curl... curl
  48. checking for objdump... objdump
  49. checking for objcopy... objcopy
  50. checking for etags... etags
  51. checking for lintian... no
  52. checking for ldd... ldd
  53. checking for fakeroot... fakeroot
  54. checking for rpmlint... no
  55. checking for gtar... no
  56. checking for gnutar... no
  57. checking for tar... tar
  58. checking for gfind... no
  59. checking for find... find
  60. checking for strip... strip
  61. checking whether strip accepts the remove-section option... yes
  62. checking whether gmake is GNU make... yes
  63. checking whether tar is GNU tar... yes
  64. configure: operating system to be used in distribution file names: Linux
  65. configure: issue to be used in distribution file names: unknown-unknown
  66. checking build system type... x86_64-unknown-linux-gnu
  67. checking host system type... x86_64-unknown-linux-gnu
  68. checking for ranlib... ranlib
  69. checking for a BSD-compatible install... /usr/bin/install -c
  70. checking for gawk... gawk
  71. checking for gcc... x86_64-pc-linux-gnu-gcc
  72. checking whether the C compiler works... yes
  73. checking for C compiler default output file name... a.out
  74. checking for suffix of executables...
  75. checking whether we are cross compiling... no
  76. checking for suffix of object files... o
  77. checking whether we are using the GNU C compiler... yes
  78. checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
  79. checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
  80. checking whether we are using the GNU C++ compiler... yes
  81. checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
  82. checking for bison... bison -y
  83. checking how to run the C preprocessor... x86_64-pc-linux-gnu-cpp
  84. checking for grep that handles long lines and -e... /bin/grep
  85. checking for egrep... /bin/grep -E
  86. checking for ANSI C header files... yes
  87. checking for sys/types.h... yes
  88. checking for sys/stat.h... yes
  89. checking for stdlib.h... yes
  90. checking for string.h... yes
  91. checking for memory.h... yes
  92. checking for strings.h... yes
  93. checking for inttypes.h... yes
  94. checking for stdint.h... yes
  95. checking for unistd.h... yes
  96. checking size of int *... 8
  97. checking whether linking C++ programs with C compiler x86_64-pc-linux-gnu-gcc works... yes
  98. checking order of construction implemented by the linker... link order o1a2o3a4, construction order o1a2o3a4, obj order LR, lib order LR
  99. checking whether time.h and sys/time.h may both be included... yes
  100. checking sys/ioctl.h usability... yes
  101. checking sys/ioctl.h presence... yes
  102. checking for sys/ioctl.h... yes
  103. checking termios.h usability... yes
  104. checking termios.h presence... yes
  105. checking for termios.h... yes
  106. checking sys/mman.h usability... yes
  107. checking sys/mman.h presence... yes
  108. checking for sys/mman.h... yes
  109. checking sys/socket.h usability... yes
  110. checking sys/socket.h presence... yes
  111. checking for sys/socket.h... yes
  112. checking netdb.h usability... yes
  113. checking netdb.h presence... yes
  114. checking for netdb.h... yes
  115. checking netinet/in.h usability... yes
  116. checking netinet/in.h presence... yes
  117. checking for netinet/in.h... yes
  118. checking arpa/inet.h usability... yes
  119. checking arpa/inet.h presence... yes
  120. checking for arpa/inet.h... yes
  121. checking sys/time.h usability... yes
  122. checking sys/time.h presence... yes
  123. checking for sys/time.h... yes
  124. checking sys/wait.h usability... yes
  125. checking sys/wait.h presence... yes
  126. checking for sys/wait.h... yes
  127. checking sys/resource.h usability... yes
  128. checking sys/resource.h presence... yes
  129. checking for sys/resource.h... yes
  130. checking io.h usability... no
  131. checking io.h presence... no
  132. checking for io.h... no
  133. checking linux/personality.h usability... yes
  134. checking linux/personality.h presence... yes
  135. checking for linux/personality.h... yes
  136. checking stddef.h usability... yes
  137. checking stddef.h presence... yes
  138. checking for stddef.h... yes
  139. checking for stdint.h... (cached) yes
  140. checking for inttypes.h... (cached) yes
  141. checking bits/wordsize.h usability... yes
  142. checking bits/wordsize.h presence... yes
  143. checking for bits/wordsize.h... yes
  144. checking endian.h usability... yes
  145. checking endian.h presence... yes
  146. checking for endian.h... yes
  147. checking elf.h usability... yes
  148. checking elf.h presence... yes
  149. checking for elf.h... yes
  150. checking execinfo.h usability... yes
  151. checking execinfo.h presence... yes
  152. checking for execinfo.h... yes
  153. checking for stdlib.h... (cached) yes
  154. checking syscall.h usability... yes
  155. checking syscall.h presence... yes
  156. checking for syscall.h... yes
  157. checking for sys/types.h... (cached) yes
  158. checking for execinfo.h... (cached) yes
  159. checking for library containing clock_gettime... -lrt
  160. checking for library containing socket... none required
  161. checking for library containing hstrerror... none required
  162. checking for library containing dlopen... -ldl
  163. checking for library containing gethostbyname... none required
  164. checking for somesillyfunction... no
  165. checking for sys_errlist... yes
  166. checking for herror... yes
  167. checking for error... yes
  168. checking for socket... yes
  169. checking for backtrace... yes
  170. checking for clock_gettime... yes
  171. checking for gnu_get_libc_version... yes
  172. checking for __environ... yes
  173. checking for _environ... yes
  174. checking for environ... yes
  175. checking for _setmode... no
  176. checking for getaddrinfo... yes
  177. checking for hstrerror... yes
  178. checking for gnu_get_libc_version... (cached) yes
  179. checking for __environ... (cached) yes
  180. checking for _environ... (cached) yes
  181. checking for environ... (cached) yes
  182. checking for _setmode... (cached) no
  183. checking for getaddrinfo... (cached) yes
  184. checking for hstrerror... (cached) yes
  185. checking whether ADDR_NO_RANDOMIZE is declared... yes
  186. checking whether gnu_get_libc_version is declared... no
  187. checking whether sys_errlist is declared... yes
  188. checking whether sys_nerr is declared... yes
  189. checking whether herror is declared... no
  190. checking whether __environ is declared... no
  191. checking whether _environ is declared... no
  192. checking whether environ is declared... no
  193. checking whether __INTEL_COMPILER is declared... no
  194. checking for size_t... yes
  195. checking for working alloca.h... yes
  196. checking for alloca... yes
  197. checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
  198. checking NTL/tools.h usability... yes
  199. checking NTL/tools.h presence... yes
  200. checking for NTL/tools.h... yes
  201. checking for personality... yes
  202. checking whether the C compiler accepts the __thread storage attribute... yes
  203. checking for gfortran... gfortran
  204. checking whether we are using the GNU Fortran compiler... yes
  205. checking whether gfortran accepts -g... yes
  206. configure: by default, adding linker flags to link with Fortran libraries
  207. checking how to get verbose linking output from gfortran... -v
  208. checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../.. -ldl -lrt -lgfortran -lm -lquadmath
  209. checking for dummy main to link with Fortran libraries... none
  210. checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
  211. checking how to get verbose linking output from gfortran... (cached) -v
  212. checking for Fortran libraries of gfortran... (cached) -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../.. -ldl -lrt -lgfortran -lm -lquadmath
  213. checking for library containing pthread_mutex_trylock... -lpthread
  214. configure: default dumpdata option for Linux operating system used, value: no
  215. checking whether g++ gets confused about C linkage in system library files... no
  216. checking for library containing tgoto... no
  217. configure: error: libcurses and libncurses not found
  218. * ERROR: sci-mathematics/Macaulay2-1.4-r1 failed (configure phase):
  219. * failed to configure Macaulay
  220. *
  221. * Call stack:
  222. * ebuild.sh, line 93: Called src_configure
  223. * environment, line 3571: Called die
  224. * The specific snippet of code:
  225. * ./configure --prefix="${D}/usr" --disable-encap --disable-strip $(use_enable optimization optimize) --enable-build-libraries="factory gc libfac" --with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" || die "failed to configure Macaulay"
  226. *
  227. * If you need support, post the output of `emerge --info '=sci-mathematics/Macaulay2-1.4-r1'`,
  228. * the complete build log and the output of `emerge -pqv '=sci-mathematics/Macaulay2-1.4-r1'`.
  229. sed: couldn't open temporary file /etc/portage/package.mask/sedOd1lAx: Permission denied