- * Package: sci-mathematics/Macaulay2-1.4-r1
- * Repository: gentoo
- * Maintainer: tomka@gentoo.org sci-mathematics@gentoo.org
- * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
- * FEATURES: sandbox test userpriv usersandbox
- Installed LAPACK for library directory lib64
- [1] reference *
- Installed BLAS for library directory lib64
- [1] reference *
- Installed CBLAS for library directory lib64
- [1] gsl
- [2] reference *
- >>> Unpacking source...
- >>> Unpacking factory-3-1-1.tar.gz to /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
- >>> Unpacking libfac-3-1-1.tar.gz to /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
- >>> Unpacking gc-7.2alpha5-2010-09-03.tar.gz to /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
- >>> Unpacking Macaulay2-1.4-r12617-src.tar.bz2 to /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
- >>> Source unpacked in /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work
- >>> Preparing source in /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work/Macaulay2-1.4-r12617 ...
- * Applying 1.4-paths-of-external-programs.patch ...
- [ ok ]
- * Applying 1.4-pari-2.5-compat.patch ...
- [ ok ]
- * Applying 1.4-comint-use-fields.patch ...
- [ ok ]
- * Applying 1.4-fix-emacs-syntax-table.patch ...
- [ ok ]
- * Running eautoreconf in '/tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work/Macaulay2-1.4-r12617' ...
- * Running aclocal ...
- [ ok ]
- * Running autoconf ...
- [ ok ]
- * Running autoheader ...
- [ ok ]
- >>> Source prepared.
- >>> Configuring source in /tmp/portage/sci-mathematics/Macaulay2-1.4-r1/work/Macaulay2-1.4-r12617 ...
- relevant environment variable values, if any:
- CC=x86_64-pc-linux-gnu-gcc
- CXX=x86_64-pc-linux-gnu-g++
- CPPFLAGS= -I/usr/include/frobby
- CFLAGS=-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches
- FCFLAGS=-O2 -pipe -ggdb -march=native -frecord-gcc-switches
- CXXFLAGS=-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches
- LDFLAGS=-Wl,-O1 -Wl,--as-needed
- checking for gmake... gmake
- checking for wget... wget
- checking for curl... curl
- checking for objdump... objdump
- checking for objcopy... objcopy
- checking for etags... etags
- checking for lintian... no
- checking for ldd... ldd
- checking for fakeroot... fakeroot
- checking for rpmlint... no
- checking for gtar... no
- checking for gnutar... no
- checking for tar... tar
- checking for gfind... no
- checking for find... find
- checking for strip... strip
- checking whether strip accepts the remove-section option... yes
- checking whether gmake is GNU make... yes
- checking whether tar is GNU tar... yes
- configure: operating system to be used in distribution file names: Linux
- configure: issue to be used in distribution file names: unknown-unknown
- checking build system type... x86_64-unknown-linux-gnu
- checking host system type... x86_64-unknown-linux-gnu
- checking for ranlib... ranlib
- checking for a BSD-compatible install... /usr/bin/install -c
- checking for gawk... gawk
- checking for gcc... x86_64-pc-linux-gnu-gcc
- checking whether the C compiler works... yes
- checking for C compiler default output file name... a.out
- checking for suffix of executables...
- checking whether we are cross compiling... no
- checking for suffix of object files... o
- checking whether we are using the GNU C compiler... yes
- checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
- checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
- checking whether we are using the GNU C++ compiler... yes
- checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
- checking for bison... bison -y
- checking how to run the C preprocessor... x86_64-pc-linux-gnu-cpp
- checking for grep that handles long lines and -e... /bin/grep
- checking for egrep... /bin/grep -E
- checking for ANSI C header files... yes
- checking for sys/types.h... yes
- checking for sys/stat.h... yes
- checking for stdlib.h... yes
- checking for string.h... yes
- checking for memory.h... yes
- checking for strings.h... yes
- checking for inttypes.h... yes
- checking for stdint.h... yes
- checking for unistd.h... yes
- checking size of int *... 8
- checking whether linking C++ programs with C compiler x86_64-pc-linux-gnu-gcc works... yes
- checking order of construction implemented by the linker... link order o1a2o3a4, construction order o1a2o3a4, obj order LR, lib order LR
- checking whether time.h and sys/time.h may both be included... yes
- checking sys/ioctl.h usability... yes
- checking sys/ioctl.h presence... yes
- checking for sys/ioctl.h... yes
- checking termios.h usability... yes
- checking termios.h presence... yes
- checking for termios.h... yes
- checking sys/mman.h usability... yes
- checking sys/mman.h presence... yes
- checking for sys/mman.h... yes
- checking sys/socket.h usability... yes
- checking sys/socket.h presence... yes
- checking for sys/socket.h... yes
- checking netdb.h usability... yes
- checking netdb.h presence... yes
- checking for netdb.h... yes
- checking netinet/in.h usability... yes
- checking netinet/in.h presence... yes
- checking for netinet/in.h... yes
- checking arpa/inet.h usability... yes
- checking arpa/inet.h presence... yes
- checking for arpa/inet.h... yes
- checking sys/time.h usability... yes
- checking sys/time.h presence... yes
- checking for sys/time.h... yes
- checking sys/wait.h usability... yes
- checking sys/wait.h presence... yes
- checking for sys/wait.h... yes
- checking sys/resource.h usability... yes
- checking sys/resource.h presence... yes
- checking for sys/resource.h... yes
- checking io.h usability... no
- checking io.h presence... no
- checking for io.h... no
- checking linux/personality.h usability... yes
- checking linux/personality.h presence... yes
- checking for linux/personality.h... yes
- checking stddef.h usability... yes
- checking stddef.h presence... yes
- checking for stddef.h... yes
- checking for stdint.h... (cached) yes
- checking for inttypes.h... (cached) yes
- checking bits/wordsize.h usability... yes
- checking bits/wordsize.h presence... yes
- checking for bits/wordsize.h... yes
- checking endian.h usability... yes
- checking endian.h presence... yes
- checking for endian.h... yes
- checking elf.h usability... yes
- checking elf.h presence... yes
- checking for elf.h... yes
- checking execinfo.h usability... yes
- checking execinfo.h presence... yes
- checking for execinfo.h... yes
- checking for stdlib.h... (cached) yes
- checking syscall.h usability... yes
- checking syscall.h presence... yes
- checking for syscall.h... yes
- checking for sys/types.h... (cached) yes
- checking for execinfo.h... (cached) yes
- checking for library containing clock_gettime... -lrt
- checking for library containing socket... none required
- checking for library containing hstrerror... none required
- checking for library containing dlopen... -ldl
- checking for library containing gethostbyname... none required
- checking for somesillyfunction... no
- checking for sys_errlist... yes
- checking for herror... yes
- checking for error... yes
- checking for socket... yes
- checking for backtrace... yes
- checking for clock_gettime... yes
- checking for gnu_get_libc_version... yes
- checking for __environ... yes
- checking for _environ... yes
- checking for environ... yes
- checking for _setmode... no
- checking for getaddrinfo... yes
- checking for hstrerror... yes
- checking for gnu_get_libc_version... (cached) yes
- checking for __environ... (cached) yes
- checking for _environ... (cached) yes
- checking for environ... (cached) yes
- checking for _setmode... (cached) no
- checking for getaddrinfo... (cached) yes
- checking for hstrerror... (cached) yes
- checking whether ADDR_NO_RANDOMIZE is declared... yes
- checking whether gnu_get_libc_version is declared... no
- checking whether sys_errlist is declared... yes
- checking whether sys_nerr is declared... yes
- checking whether herror is declared... no
- checking whether __environ is declared... no
- checking whether _environ is declared... no
- checking whether environ is declared... no
- checking whether __INTEL_COMPILER is declared... no
- checking for size_t... yes
- checking for working alloca.h... yes
- checking for alloca... yes
- checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
- checking NTL/tools.h usability... yes
- checking NTL/tools.h presence... yes
- checking for NTL/tools.h... yes
- checking for personality... yes
- checking whether the C compiler accepts the __thread storage attribute... yes
- checking for gfortran... gfortran
- checking whether we are using the GNU Fortran compiler... yes
- checking whether gfortran accepts -g... yes
- configure: by default, adding linker flags to link with Fortran libraries
- checking how to get verbose linking output from gfortran... -v
- checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../.. -ldl -lrt -lgfortran -lm -lquadmath
- checking for dummy main to link with Fortran libraries... none
- checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
- checking how to get verbose linking output from gfortran... (cached) -v
- checking for Fortran libraries of gfortran... (cached) -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../.. -ldl -lrt -lgfortran -lm -lquadmath
- checking for library containing pthread_mutex_trylock... -lpthread
- configure: default dumpdata option for Linux operating system used, value: no
- checking whether g++ gets confused about C linkage in system library files... no
- checking for library containing tgoto... no
- configure: error: libcurses and libncurses not found
- * ERROR: sci-mathematics/Macaulay2-1.4-r1 failed (configure phase):
- * failed to configure Macaulay
- *
- * Call stack:
- * ebuild.sh, line 93: Called src_configure
- * environment, line 3571: Called die
- * The specific snippet of code:
- * ./configure --prefix="${D}/usr" --disable-encap --disable-strip $(use_enable optimization optimize) --enable-build-libraries="factory gc libfac" --with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" || die "failed to configure Macaulay"
- *
- * If you need support, post the output of `emerge --info '=sci-mathematics/Macaulay2-1.4-r1'`,
- * the complete build log and the output of `emerge -pqv '=sci-mathematics/Macaulay2-1.4-r1'`.
- sed: couldn't open temporary file /etc/portage/package.mask/sedOd1lAx: Permission denied