1. * Package: sci-biology/meme-4.3.0
2. * Repository: gentoo
3. * Maintainer: weaver@gentoo.org sci-biology@gentoo.org
4. * USE: amd64 elibc_glibc kernel_linux test userland_GNU
5. * FEATURES: sandbox test userpriv usersandbox
6. Installed LAPACK for library directory lib64
7. [1] reference *
8. Installed BLAS for library directory lib64
9. [1] reference *
10. Installed CBLAS for library directory lib64
11. [1] gsl
12. [2] reference *
13. >>> Unpacking source...
14. >>> Unpacking meme_4.3.0.tar.gz to /tmp/portage/sci-biology/meme-4.3.0/work
15. >>> Source unpacked in /tmp/portage/sci-biology/meme-4.3.0/work
16. >>> Preparing source in /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0 ...
17. * Applying meme-4.0.0-Makefile.am.patch ...
18. [ ok ]
19. * Running eautoreconf in '/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0' ...
20. * Running libtoolize --install --copy --force --automake ...
21. [ ok ]
22. * Running aclocal ...
23. [ ok ]
24. * Running autoconf ...
25. [ ok ]
26. * Running autoheader ...
27. [ ok ]
28. * Running automake --add-missing --copy ...
29. [ ok ]
30. * Running elibtoolize in: meme_4.3.0/src/libxml2/
31. * Applying portage/1.5.10 patch ...
32. * Applying sed/1.5.6 patch ...
33. * Applying as-needed/1.5 patch ...
34. * Running elibtoolize in: meme_4.3.0/config/
35. * Applying portage/1.2.0 patch ...
36. * Applying sed/1.5.6 patch ...
37. * Applying as-needed/2.2.6 patch ...
38. >>> Source prepared.
39. >>> Configuring source in /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0 ...
40. * econf: updating meme_4.3.0/config/config.sub with /usr/share/gnuconfig/config.sub
41. * econf: updating meme_4.3.0/config/config.guess with /usr/share/gnuconfig/config.guess
42. ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/opt/meme/lib64 --prefix=/opt/meme --sysconfdir=/opt/meme/etc --with-logs=/var/log/meme --enable-serial
43. checking for a BSD-compatible install... /usr/bin/install -c
44. checking whether build environment is sane... yes
45. checking for a thread-safe mkdir -p... /bin/mkdir -p
46. checking for gawk... gawk
47. checking whether make sets $(MAKE)... yes
48. checking for style of include used by make... GNU
49. checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
50. checking whether the C compiler works... yes
51. checking for C compiler default output file name... a.out
52. checking for suffix of executables...
53. checking whether we are cross compiling... no
54. checking for suffix of object files... o
55. checking whether we are using the GNU C compiler... yes
56. checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
57. checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
58. checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
59. checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
60. checking build system type... x86_64-pc-linux-gnu
61. checking host system type... x86_64-pc-linux-gnu
62. checking how to print strings... printf
63. checking for a sed that does not truncate output... /bin/sed
64. checking for grep that handles long lines and -e... /bin/grep
65. checking for egrep... /bin/grep -E
66. checking for fgrep... /bin/grep -F
67. checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
68. checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
69. checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
70. checking the name lister (/usr/bin/nm -B) interface... BSD nm
71. checking whether ln -s works... yes
72. checking the maximum length of command line arguments... 1572864
73. checking whether the shell understands some XSI constructs... yes
74. checking whether the shell understands "+="... yes
75. checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
76. checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
77. checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
78. checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
79. checking how to recognize dependent libraries... pass_all
80. checking for x86_64-pc-linux-gnu-dlltool... no
81. checking for dlltool... no
82. checking how to associate runtime and link libraries... printf %s\n
83. checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
84. checking for archiver @FILE support... @
85. checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
86. checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
87. checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
88. checking for sysroot... no
89. checking for x86_64-pc-linux-gnu-mt... no
90. checking for mt... no
91. checking if : is a manifest tool... no
92. checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
93. checking for ANSI C header files... yes
94. checking for sys/types.h... yes
95. checking for sys/stat.h... yes
96. checking for stdlib.h... yes
97. checking for string.h... yes
98. checking for memory.h... yes
99. checking for strings.h... yes
100. checking for inttypes.h... yes
101. checking for stdint.h... yes
102. checking for unistd.h... yes
103. checking for dlfcn.h... yes
104. checking for objdir... .libs
105. checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
106. checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
107. checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
108. checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
109. checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
110. checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
111. checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
112. checking whether -lc should be explicitly linked in... no
113. checking dynamic linker characteristics... GNU/Linux ld.so
114. checking how to hardcode library paths into programs... immediate
115. checking whether stripping libraries is possible... yes
116. checking if libtool supports shared libraries... yes
117. checking whether to build shared libraries... yes
118. checking whether to build static libraries... yes
119. checking whether make sets $(MAKE)... (cached) yes
120. checking for ld... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
121. checking for sed... (cached) /bin/sed
122. checking for mpicc... /usr/bin/mpicc
123. checking for mail... /usr/bin/mail
124. checking for sendmail... /usr/sbin/sendmail
125. checking for perl... /usr/bin/perl
126. checking for python... /usr/bin/python
127. checking for convert... /usr/bin/convert
128. checking for dot... /usr/bin/dot
129. checking for xml2-config... /usr/bin/xml2-config
130. checking for xslt-config... /usr/bin/xslt-config
131. checking for ant... /usr/bin/ant
132. checking for isnan, sqrt, log, exp, fabs, pow, floor, ceil in -lm... yes
133. checking for ANSI C header files... (cached) yes
134. checking for sys/wait.h that is POSIX.1 compatible... yes
135. checking arpa/inet.h usability... yes
136. checking arpa/inet.h presence... yes
137. checking for arpa/inet.h... yes
138. checking ctype.h usability... yes
139. checking ctype.h presence... yes
140. checking for ctype.h... yes
141. checking fcntl.h usability... yes
142. checking fcntl.h presence... yes
143. checking for fcntl.h... yes
144. checking limits.h usability... yes
145. checking limits.h presence... yes
146. checking for limits.h... yes
147. checking netdb.h usability... yes
148. checking netdb.h presence... yes
149. checking for netdb.h... yes
150. checking netinet/in.h usability... yes
151. checking netinet/in.h presence... yes
152. checking for netinet/in.h... yes
153. checking for stdlib.h... (cached) yes
154. checking for string.h... (cached) yes
155. checking for strings.h... (cached) yes
156. checking sys/socket.h usability... yes
157. checking sys/socket.h presence... yes
158. checking for sys/socket.h... yes
159. checking sys/time.h usability... yes
160. checking sys/time.h presence... yes
161. checking for sys/time.h... yes
162. checking for unistd.h... (cached) yes
163. checking for an ANSI C-conforming const... yes
164. checking for stdbool.h that conforms to C99... yes
165. checking for _Bool... yes
166. checking for pid_t... yes
167. checking for size_t... yes
168. checking vfork.h usability... no
169. checking vfork.h presence... no
170. checking for vfork.h... no
171. checking for fork... yes
172. checking for vfork... yes
173. checking for working fork... yes
174. checking for working vfork... (cached) yes
175. checking for stdlib.h... (cached) yes
176. checking for GNU libc compatible malloc... yes
177. checking for stdlib.h... (cached) yes
178. checking for GNU libc compatible realloc... yes
179. checking return type of signal handlers... void
180. checking whether lstat correctly handles trailing slash... yes
181. checking whether stat accepts an empty string... no
182. checking for floor... yes
183. checking for getcwd... yes
184. checking for gethostbyname... yes
185. checking for isascii... yes
186. checking for memset... yes
187. checking for pow... yes
188. checking for rint... yes
189. checking for socket... yes
190. checking for sqrt... yes
191. checking for strchr... yes
192. checking for strcspn... yes
193. checking for strdup... yes
194. checking for strspn... yes
195. checking for strstr... yes
196. checking for strlcpy... no
197. checking for MPI_Comm_rank in -lmpi... yes
198. checking whether to enable OpenMP multithreading support... no
199. checking for convert... (cached) /usr/bin/convert
200. checking for dot... (cached) /usr/bin/dot
201. configure: creating ./config.status
202. config.status: creating Makefile
203. config.status: creating doc/Makefile
204. config.status: creating doc/examples/Makefile
205. config.status: creating doc/examples/fimo_example_output_files/Makefile
206. config.status: creating doc/examples/glam2_example_output_files/Makefile
207. config.status: creating doc/examples/glam2scan_example_output_files/Makefile
208. config.status: creating doc/examples/mast_example_output_files/Makefile
209. config.status: creating doc/examples/meme_example_output_files/Makefile
210. config.status: creating doc/examples/tomtom_example_output_files/Makefile
211. config.status: creating doc/images/Makefile
212. config.status: creating etc/Makefile
213. config.status: creating src/filters/Makefile
214. config.status: creating src/filters/purge/Makefile
215. config.status: creating src/filters/dust/Makefile
216. config.status: creating scripts/Makefile
217. config.status: creating src/Makefile
218. config.status: creating src/libxml2/Makefile
219. config.status: creating src/libxml2/include/Makefile
220. config.status: creating src/libxml2/include/libxml/Makefile
221. config.status: creating src/libxslt/Makefile
222. config.status: creating src/parallel/Makefile
223. config.status: creating tests/Makefile
224. config.status: creating tests/common/Makefile
225. config.status: creating tests/mast/Makefile
226. config.status: creating tests/meme/Makefile
227. config.status: creating tests/clustalw2fasta/Makefile
228. config.status: creating tests/draw-mhmm/Makefile
229. config.status: creating tests/mhmm/Makefile
230. config.status: creating tests/mhmms/Makefile
231. config.status: creating tests/motiph/Makefile
232. config.status: creating tests/gomo/Makefile
233. config.status: creating tests/tomtom/Makefile
234. config.status: creating tests/scaffold/Makefile
235. config.status: creating tests/qvalue/Makefile
236. config.status: creating tests/web/Makefile
237. config.status: creating website/Makefile
238. config.status: creating website/cgi-bin/Makefile
239. config.status: creating website/html/Makefile
240. config.status: creating website/scripts/Makefile
241. config.status: creating website/images/Makefile
242. config.status: creating config.h
243. config.status: executing depfiles commands
244. config.status: executing libtool commands
246. ========================
247. Configuration parameters
248. ========================
250. Install path: /opt/meme
251. Install UID:
252. Version: 4.3.0
253. C compiler: x86_64-pc-linux-gnu-gcc
254. C compiler flags: -DUNIX -D__USE_FIXED_PROTOTYPES__ -O
255. Linker: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
256. Special Libs: -lmpi -lm
257. MPICC /usr/bin/mpicc
258. MPIINC -DMPI -I/usr/include
259. MPILIBDIR /usr/lib
260. MPIFLAGS -DPARALLEL
261. MPIRUN
262. OpenMP Support: no
263. MEME URL: http://localhost/meme
264. MEME WEB DIRECTORY: ${prefix}/web
265. MEME CONTACT: @localhost
266. MEME_LOGS: /var/log/meme
267. BLOCKMAKER URL: http://blocks.fhcrc.org/blocks-bin/process_blocks.pl
268. GO-SERVER URL: http://amigo.geneontology.org/cgi-bin/amigo/
269. PERL: /usr/bin/perl
270. CONVERT: /usr/bin/convert
271. DOT: /usr/bin/dot
272. BUILD LIBXML2: no
273. LIBXML2 compiler flags: -I/usr/include/libxml2
274. LIBXML2 libs: -lxml2 -lz -lm
275. BUILD LIBXSLT: no
276. LIBXSLT compiler flags: -I/usr/include/libxml2
277. LIBXSLT libs: -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt
278. MEME_DB: ${prefix}/db
279. MEME_LOGS: /var/log/meme
280. OPAL URL: no
281. OPAL XML: no
283. Run the following commands to compile, test and install meme:
284. make
285. make test
286. make install
288. >>> Source configured.
289. >>> Compiling source in /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0 ...
290. make -j24
291. make all-recursive
292. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
293. Making all in src
294. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
295. echo '#define MEME_DIR "/opt/meme"' >dir.h; \
296. echo '#define ETC_DIR "/opt/meme/etc" ' >> dir.h
297. make all-recursive
298. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
299. Making all in filters
300. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
301. Making all in purge
302. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge'
303. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT afnio.o -MD -MP -MF .deps/afnio.Tpo -c -o afnio.o afnio.c
304. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT alphabet.o -MD -MP -MF .deps/alphabet.Tpo -c -o alphabet.o alphabet.c
305. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT block.o -MD -MP -MF .deps/block.Tpo -c -o block.o block.c
306. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT dheap.o -MD -MP -MF .deps/dheap.Tpo -c -o dheap.o dheap.c
307. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT gblast.o -MD -MP -MF .deps/gblast.Tpo -c -o gblast.o gblast.c
308. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT karlin.o -MD -MP -MF .deps/karlin.Tpo -c -o karlin.o karlin.c
309. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mheap.o -MD -MP -MF .deps/mheap.Tpo -c -o mheap.o mheap.c
310. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mlist.o -MD -MP -MF .deps/mlist.Tpo -c -o mlist.o mlist.c
311. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pairaln.o -MD -MP -MF .deps/pairaln.Tpo -c -o pairaln.o pairaln.c
312. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pmain.o -MD -MP -MF .deps/pmain.Tpo -c -o pmain.o pmain.c
313. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT purge.o -MD -MP -MF .deps/purge.Tpo -c -o purge.o purge.c
314. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT random.o -MD -MP -MF .deps/random.Tpo -c -o random.o random.c
315. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT seqset.o -MD -MP -MF .deps/seqset.Tpo -c -o seqset.o seqset.c
316. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT sequence.o -MD -MP -MF .deps/sequence.Tpo -c -o sequence.o sequence.c
317. mv -f .deps/random.Tpo .deps/random.Po
318. mv -f .deps/mlist.Tpo .deps/mlist.Po
319. mv -f .deps/afnio.Tpo .deps/afnio.Po
320. mv -f .deps/mheap.Tpo .deps/mheap.Po
321. mv -f .deps/pmain.Tpo .deps/pmain.Po
322. mv -f .deps/purge.Tpo .deps/purge.Po
323. mv -f .deps/dheap.Tpo .deps/dheap.Po
324. mv -f .deps/karlin.Tpo .deps/karlin.Po
325. mv -f .deps/pairaln.Tpo .deps/pairaln.Po
326. mv -f .deps/alphabet.Tpo .deps/alphabet.Po
327. mv -f .deps/gblast.Tpo .deps/gblast.Po
328. mv -f .deps/seqset.Tpo .deps/seqset.Po
329. mv -f .deps/block.Tpo .deps/block.Po
330. mv -f .deps/sequence.Tpo .deps/sequence.Po
331. /bin/sh ../../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lmpi -lm
332. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -Wl,--as-needed /usr/lib64/libmpi.so -L/usr/lib64 /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
333. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge'
334. Making all in dust
335. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust'
336. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT tust.o -MD -MP -MF .deps/tust.Tpo -c -o tust.o tust.c
337. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT dust.o -MD -MP -MF .deps/dust.Tpo -c -o dust.o dust.c
338. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT getfa.o -MD -MP -MF .deps/getfa.Tpo -c -o getfa.o getfa.c
339. mv -f .deps/tust.Tpo .deps/tust.Po
340. mv -f .deps/dust.Tpo .deps/dust.Po
341. mv -f .deps/getfa.Tpo .deps/getfa.Po
342. /bin/sh ../../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o dust tust.o dust.o getfa.o -lmpi -lm
343. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o dust tust.o dust.o getfa.o -Wl,--as-needed /usr/lib64/libmpi.so -L/usr/lib64 /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
344. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust'
345. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
346. make[5]: Nothing to be done for `all-am'.
347. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
348. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
349. Making all in libxml2
350. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
351. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
352. make[5]: Nothing to be done for `all-am'.
353. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
354. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
355. Making all in libxslt
356. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt'
357. make[4]: Nothing to be done for `all'.
358. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt'
359. Making all in .
360. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
361. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT liblogo_la-ceqlogo.lo -MD -MP -MF .deps/liblogo_la-ceqlogo.Tpo -c -o liblogo_la-ceqlogo.lo `test -f 'ceqlogo.c' || echo './'`ceqlogo.c
362. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c -o libcommon_la-array.lo `test -f 'array.c' || echo './'`array.c
363. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-background.lo -MD -MP -MF .deps/libcommon_la-background.Tpo -c -o libcommon_la-background.lo `test -f 'background.c' || echo './'`background.c
364. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c -o libcommon_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c
365. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_alph.lo -MD -MP -MF .deps/libcommon_la-hash_alph.Tpo -c -o libcommon_la-hash_alph.lo `test -f 'hash_alph.c' || echo './'`hash_alph.c
366. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-heap.lo -MD -MP -MF .deps/libcommon_la-heap.Tpo -c -o libcommon_la-heap.lo `test -f 'heap.c' || echo './'`heap.c
367. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-io.lo -MD -MP -MF .deps/libcommon_la-io.Tpo -c -o libcommon_la-io.lo `test -f 'io.c' || echo './'`io.c
368. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-meme-io.lo -MD -MP -MF .deps/libcommon_la-meme-io.Tpo -c -o libcommon_la-meme-io.lo `test -f 'meme-io.c' || echo './'`meme-io.c
369. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c -o libcommon_la-matrix.lo `test -f 'matrix.c' || echo './'`matrix.c
370. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c -o libcommon_la-motif.lo `test -f 'motif.c' || echo './'`motif.c
371. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-psp.lo -MD -MP -MF .deps/libcommon_la-psp.Tpo -c -o libcommon_la-psp.lo `test -f 'psp.c' || echo './'`psp.c
372. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c -o libcommon_la-rdb-matrix.lo `test -f 'rdb-matrix.c' || echo './'`rdb-matrix.c
373. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c -o libcommon_la-read_sequence.lo `test -f 'read_sequence.c' || echo './'`read_sequence.c
374. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_csv.lo -MD -MP -MF .deps/libcommon_la-read_csv.Tpo -c -o libcommon_la-read_csv.lo `test -f 'read_csv.c' || echo './'`read_csv.c
375. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_tamo.lo -MD -MP -MF .deps/libcommon_la-read_tamo.Tpo -c -o libcommon_la-read_tamo.lo `test -f 'read_tamo.c' || echo './'`read_tamo.c
376. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c -o libcommon_la-utils.lo `test -f 'utils.c' || echo './'`utils.c
377. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c -o libcommon_la-xml-util.lo `test -f 'xml-util.c' || echo './'`xml-util.c
378. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-zscore.lo -MD -MP -MF .deps/libcommon_la-zscore.Tpo -c -o libcommon_la-zscore.lo `test -f 'zscore.c' || echo './'`zscore.c
379. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ama_scan.lo -MD -MP -MF .deps/libmetameme_la-ama_scan.Tpo -c -o libmetameme_la-ama_scan.lo `test -f 'ama_scan.c' || echo './'`ama_scan.c
380. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alignment.lo -MD -MP -MF .deps/libmetameme_la-alignment.Tpo -c -o libmetameme_la-alignment.lo `test -f 'alignment.c' || echo './'`alignment.c
381. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alphabet.lo -MD -MP -MF .deps/libmetameme_la-alphabet.Tpo -c -o libmetameme_la-alphabet.lo `test -f 'alphabet.c' || echo './'`alphabet.c
382. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-array-list.lo -MD -MP -MF .deps/libmetameme_la-array-list.Tpo -c -o libmetameme_la-array-list.lo `test -f 'array-list.c' || echo './'`array-list.c
383. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-beadstring-xml.lo -MD -MP -MF .deps/libmetameme_la-beadstring-xml.Tpo -c -o libmetameme_la-beadstring-xml.lo `test -f 'beadstring-xml.c' || echo './'`beadstring-xml.c
384. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-binary-search.lo -MD -MP -MF .deps/libmetameme_la-binary-search.Tpo -c -o libmetameme_la-binary-search.lo `test -f 'binary-search.c' || echo './'`binary-search.c
385. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c hash_table.c -fPIC -DPIC -o .libs/libcommon_la-hash_table.o
386. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-heap.lo -MD -MP -MF .deps/libcommon_la-heap.Tpo -c heap.c -fPIC -DPIC -o .libs/libcommon_la-heap.o
387. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-background.lo -MD -MP -MF .deps/libcommon_la-background.Tpo -c background.c -fPIC -DPIC -o .libs/libcommon_la-background.o
388. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c array.c -fPIC -DPIC -o .libs/libcommon_la-array.o
389. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT liblogo_la-ceqlogo.lo -MD -MP -MF .deps/liblogo_la-ceqlogo.Tpo -c ceqlogo.c -fPIC -DPIC -o .libs/liblogo_la-ceqlogo.o
390. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_alph.lo -MD -MP -MF .deps/libcommon_la-hash_alph.Tpo -c hash_alph.c -fPIC -DPIC -o .libs/libcommon_la-hash_alph.o
391. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c rdb-matrix.c -fPIC -DPIC -o .libs/libcommon_la-rdb-matrix.o
392. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-io.lo -MD -MP -MF .deps/libcommon_la-io.Tpo -c io.c -fPIC -DPIC -o .libs/libcommon_la-io.o
393. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-psp.lo -MD -MP -MF .deps/libcommon_la-psp.Tpo -c psp.c -fPIC -DPIC -o .libs/libcommon_la-psp.o
394. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_csv.lo -MD -MP -MF .deps/libcommon_la-read_csv.Tpo -c read_csv.c -fPIC -DPIC -o .libs/libcommon_la-read_csv.o
395. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c read_sequence.c -fPIC -DPIC -o .libs/libcommon_la-read_sequence.o
396. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-meme-io.lo -MD -MP -MF .deps/libcommon_la-meme-io.Tpo -c meme-io.c -fPIC -DPIC -o .libs/libcommon_la-meme-io.o
397. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c motif.c -fPIC -DPIC -o .libs/libcommon_la-motif.o
398. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c utils.c -fPIC -DPIC -o .libs/libcommon_la-utils.o
399. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c matrix.c -fPIC -DPIC -o .libs/libcommon_la-matrix.o
400. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_tamo.lo -MD -MP -MF .deps/libcommon_la-read_tamo.Tpo -c read_tamo.c -fPIC -DPIC -o .libs/libcommon_la-read_tamo.o
401. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-zscore.lo -MD -MP -MF .deps/libcommon_la-zscore.Tpo -c zscore.c -fPIC -DPIC -o .libs/libcommon_la-zscore.o
402. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alphabet.lo -MD -MP -MF .deps/libmetameme_la-alphabet.Tpo -c alphabet.c -fPIC -DPIC -o .libs/libmetameme_la-alphabet.o
403. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c xml-util.c -fPIC -DPIC -o .libs/libcommon_la-xml-util.o
404. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ama_scan.lo -MD -MP -MF .deps/libmetameme_la-ama_scan.Tpo -c ama_scan.c -fPIC -DPIC -o .libs/libmetameme_la-ama_scan.o
405. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alignment.lo -MD -MP -MF .deps/libmetameme_la-alignment.Tpo -c alignment.c -fPIC -DPIC -o .libs/libmetameme_la-alignment.o
406. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-beadstring-xml.lo -MD -MP -MF .deps/libmetameme_la-beadstring-xml.Tpo -c beadstring-xml.c -fPIC -DPIC -o .libs/libmetameme_la-beadstring-xml.o
407. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-array-list.lo -MD -MP -MF .deps/libmetameme_la-array-list.Tpo -c array-list.c -fPIC -DPIC -o .libs/libmetameme_la-array-list.o
408. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-binary-search.lo -MD -MP -MF .deps/libmetameme_la-binary-search.Tpo -c binary-search.c -fPIC -DPIC -o .libs/libmetameme_la-binary-search.o
409. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-binary-search.lo -MD -MP -MF .deps/libmetameme_la-binary-search.Tpo -c binary-search.c -o libmetameme_la-binary-search.o >/dev/null 2>&1
410. utils.c: In function 'open_command_pipe':
411. utils.c:255:5: warning: format not a string literal and no format arguments [-Wformat-security]
412. utils.c: In function 'date_and_time':
413. utils.c:676:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
414. mv -f .deps/libmetameme_la-binary-search.Tpo .deps/libmetameme_la-binary-search.Plo
415. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-build-hmm.lo -MD -MP -MF .deps/libmetameme_la-build-hmm.Tpo -c -o libmetameme_la-build-hmm.lo `test -f 'build-hmm.c' || echo './'`build-hmm.c
416. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-zscore.lo -MD -MP -MF .deps/libcommon_la-zscore.Tpo -c zscore.c -o libcommon_la-zscore.o >/dev/null 2>&1
417. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-io.lo -MD -MP -MF .deps/libcommon_la-io.Tpo -c io.c -o libcommon_la-io.o >/dev/null 2>&1
418. ceqlogo.c: In function 'F_mkdir':
419. ceqlogo.c:1076:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
420. ceqlogo.c: In function 'F_rmdir':
421. ceqlogo.c:1068:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
422. ceqlogo.c: In function 'CL_create2':
423. ceqlogo.c:188:13: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
424. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_csv.lo -MD -MP -MF .deps/libcommon_la-read_csv.Tpo -c read_csv.c -o libcommon_la-read_csv.o >/dev/null 2>&1
425. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_table.lo -MD -MP -MF .deps/libcommon_la-hash_table.Tpo -c hash_table.c -o libcommon_la-hash_table.o >/dev/null 2>&1
426. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-build-hmm.lo -MD -MP -MF .deps/libmetameme_la-build-hmm.Tpo -c build-hmm.c -fPIC -DPIC -o .libs/libmetameme_la-build-hmm.o
427. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-heap.lo -MD -MP -MF .deps/libcommon_la-heap.Tpo -c heap.c -o libcommon_la-heap.o >/dev/null 2>&1
428. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-array-list.lo -MD -MP -MF .deps/libmetameme_la-array-list.Tpo -c array-list.c -o libmetameme_la-array-list.o >/dev/null 2>&1
429. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_sequence.lo -MD -MP -MF .deps/libcommon_la-read_sequence.Tpo -c read_sequence.c -o libcommon_la-read_sequence.o >/dev/null 2>&1
430. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ama_scan.lo -MD -MP -MF .deps/libmetameme_la-ama_scan.Tpo -c ama_scan.c -o libmetameme_la-ama_scan.o >/dev/null 2>&1
431. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-beadstring-xml.lo -MD -MP -MF .deps/libmetameme_la-beadstring-xml.Tpo -c beadstring-xml.c -o libmetameme_la-beadstring-xml.o >/dev/null 2>&1
432. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-xml-util.lo -MD -MP -MF .deps/libcommon_la-xml-util.Tpo -c xml-util.c -o libcommon_la-xml-util.o >/dev/null 2>&1
433. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alphabet.lo -MD -MP -MF .deps/libmetameme_la-alphabet.Tpo -c alphabet.c -o libmetameme_la-alphabet.o >/dev/null 2>&1
434. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-read_tamo.lo -MD -MP -MF .deps/libcommon_la-read_tamo.Tpo -c read_tamo.c -o libcommon_la-read_tamo.o >/dev/null 2>&1
435. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-motif.lo -MD -MP -MF .deps/libcommon_la-motif.Tpo -c motif.c -o libcommon_la-motif.o >/dev/null 2>&1
436. mv -f .deps/libcommon_la-zscore.Tpo .deps/libcommon_la-zscore.Plo
437. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-rdb-matrix.lo -MD -MP -MF .deps/libcommon_la-rdb-matrix.Tpo -c rdb-matrix.c -o libcommon_la-rdb-matrix.o >/dev/null 2>&1
438. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-cisml.lo -MD -MP -MF .deps/libmetameme_la-cisml.Tpo -c -o libmetameme_la-cisml.lo `test -f 'cisml.c' || echo './'`cisml.c
439. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-hash_alph.lo -MD -MP -MF .deps/libcommon_la-hash_alph.Tpo -c hash_alph.c -o libcommon_la-hash_alph.o >/dev/null 2>&1
440. mv -f .deps/libcommon_la-io.Tpo .deps/libcommon_la-io.Plo
441. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-clustalw-io.lo -MD -MP -MF .deps/libmetameme_la-clustalw-io.Tpo -c -o libmetameme_la-clustalw-io.lo `test -f 'clustalw-io.c' || echo './'`clustalw-io.c
442. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-cisml.lo -MD -MP -MF .deps/libmetameme_la-cisml.Tpo -c cisml.c -fPIC -DPIC -o .libs/libmetameme_la-cisml.o
443. mv -f .deps/libcommon_la-read_csv.Tpo .deps/libcommon_la-read_csv.Plo
444. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-clustalw-io.lo -MD -MP -MF .deps/libmetameme_la-clustalw-io.Tpo -c clustalw-io.c -fPIC -DPIC -o .libs/libmetameme_la-clustalw-io.o
445. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-dp.lo -MD -MP -MF .deps/libmetameme_la-dp.Tpo -c -o libmetameme_la-dp.lo `test -f 'dp.c' || echo './'`dp.c
446. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-background.lo -MD -MP -MF .deps/libcommon_la-background.Tpo -c background.c -o libcommon_la-background.o >/dev/null 2>&1
447. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-utils.lo -MD -MP -MF .deps/libcommon_la-utils.Tpo -c utils.c -o libcommon_la-utils.o >/dev/null 2>&1
448. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-psp.lo -MD -MP -MF .deps/libcommon_la-psp.Tpo -c psp.c -o libcommon_la-psp.o >/dev/null 2>&1
449. mv -f .deps/libcommon_la-hash_table.Tpo .deps/libcommon_la-hash_table.Plo
450. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel.lo -MD -MP -MF .deps/libmetameme_la-evomodel.Tpo -c -o libmetameme_la-evomodel.lo `test -f 'evomodel.c' || echo './'`evomodel.c
451. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-dp.lo -MD -MP -MF .deps/libmetameme_la-dp.Tpo -c dp.c -fPIC -DPIC -o .libs/libmetameme_la-dp.o
452. mv -f .deps/libcommon_la-heap.Tpo .deps/libcommon_la-heap.Plo
453. mv -f .deps/libmetameme_la-array-list.Tpo .deps/libmetameme_la-array-list.Plo
454. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel_with_loss.lo -MD -MP -MF .deps/libmetameme_la-evomodel_with_loss.Tpo -c -o libmetameme_la-evomodel_with_loss.lo `test -f 'evomodel_with_loss.c' || echo './'`evomodel_with_loss.c
455. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fasta-io.lo -MD -MP -MF .deps/libmetameme_la-fasta-io.Tpo -c -o libmetameme_la-fasta-io.lo `test -f 'fasta-io.c' || echo './'`fasta-io.c
456. mv -f .deps/libcommon_la-read_sequence.Tpo .deps/libcommon_la-read_sequence.Plo
457. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel.lo -MD -MP -MF .deps/libmetameme_la-evomodel.Tpo -c evomodel.c -fPIC -DPIC -o .libs/libmetameme_la-evomodel.o
458. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fitevd.lo -MD -MP -MF .deps/libmetameme_la-fitevd.Tpo -c -o libmetameme_la-fitevd.lo `test -f 'fitevd.c' || echo './'`fitevd.c
459. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-array.lo -MD -MP -MF .deps/libcommon_la-array.Tpo -c array.c -o libcommon_la-array.o >/dev/null 2>&1
460. mv -f .deps/libmetameme_la-ama_scan.Tpo .deps/libmetameme_la-ama_scan.Plo
461. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-gendb.lo -MD -MP -MF .deps/libmetameme_la-gendb.Tpo -c -o libmetameme_la-gendb.lo `test -f 'gendb.c' || echo './'`gendb.c
462. mv -f .deps/libmetameme_la-beadstring-xml.Tpo .deps/libmetameme_la-beadstring-xml.Plo
463. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fasta-io.lo -MD -MP -MF .deps/libmetameme_la-fasta-io.Tpo -c fasta-io.c -fPIC -DPIC -o .libs/libmetameme_la-fasta-io.o
464. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-karlin.lo -MD -MP -MF .deps/libmetameme_la-karlin.Tpo -c -o libmetameme_la-karlin.lo `test -f 'karlin.c' || echo './'`karlin.c
465. mv -f .deps/libcommon_la-xml-util.Tpo .deps/libcommon_la-xml-util.Plo
466. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel_with_loss.lo -MD -MP -MF .deps/libmetameme_la-evomodel_with_loss.Tpo -c evomodel_with_loss.c -fPIC -DPIC -o .libs/libmetameme_la-evomodel_with_loss.o
467. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-linked-list.lo -MD -MP -MF .deps/libmetameme_la-linked-list.Tpo -c -o libmetameme_la-linked-list.lo `test -f 'linked-list.c' || echo './'`linked-list.c
468. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-alignment.lo -MD -MP -MF .deps/libmetameme_la-alignment.Tpo -c alignment.c -o libmetameme_la-alignment.o >/dev/null 2>&1
469. mv -f .deps/libmetameme_la-alphabet.Tpo .deps/libmetameme_la-alphabet.Plo
470. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-log-hmm.lo -MD -MP -MF .deps/libmetameme_la-log-hmm.Tpo -c -o libmetameme_la-log-hmm.lo `test -f 'log-hmm.c' || echo './'`log-hmm.c
471. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fitevd.lo -MD -MP -MF .deps/libmetameme_la-fitevd.Tpo -c fitevd.c -fPIC -DPIC -o .libs/libmetameme_la-fitevd.o
472. mv -f .deps/libcommon_la-read_tamo.Tpo .deps/libcommon_la-read_tamo.Plo
473. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-match.lo -MD -MP -MF .deps/libmetameme_la-match.Tpo -c -o libmetameme_la-match.lo `test -f 'match.c' || echo './'`match.c
474. mv -f .deps/libcommon_la-motif.Tpo .deps/libcommon_la-motif.Plo
475. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-merger.lo -MD -MP -MF .deps/libmetameme_la-merger.Tpo -c -o libmetameme_la-merger.lo `test -f 'merger.c' || echo './'`merger.c
476. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-gendb.lo -MD -MP -MF .deps/libmetameme_la-gendb.Tpo -c gendb.c -fPIC -DPIC -o .libs/libmetameme_la-gendb.o
477. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-karlin.lo -MD -MP -MF .deps/libmetameme_la-karlin.Tpo -c karlin.c -fPIC -DPIC -o .libs/libmetameme_la-karlin.o
478. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-linked-list.lo -MD -MP -MF .deps/libmetameme_la-linked-list.Tpo -c linked-list.c -fPIC -DPIC -o .libs/libmetameme_la-linked-list.o
479. mv -f .deps/libcommon_la-rdb-matrix.Tpo .deps/libcommon_la-rdb-matrix.Plo
480. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-matrix.lo -MD -MP -MF .deps/libcommon_la-matrix.Tpo -c matrix.c -o libcommon_la-matrix.o >/dev/null 2>&1
481. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-metameme.lo -MD -MP -MF .deps/libmetameme_la-metameme.Tpo -c -o libmetameme_la-metameme.lo `test -f 'metameme.c' || echo './'`metameme.c
482. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libcommon_la-meme-io.lo -MD -MP -MF .deps/libcommon_la-meme-io.Tpo -c meme-io.c -o libcommon_la-meme-io.o >/dev/null 2>&1
483. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-log-hmm.lo -MD -MP -MF .deps/libmetameme_la-log-hmm.Tpo -c log-hmm.c -fPIC -DPIC -o .libs/libmetameme_la-log-hmm.o
484. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-match.lo -MD -MP -MF .deps/libmetameme_la-match.Tpo -c match.c -fPIC -DPIC -o .libs/libmetameme_la-match.o
485. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-merger.lo -MD -MP -MF .deps/libmetameme_la-merger.Tpo -c merger.c -fPIC -DPIC -o .libs/libmetameme_la-merger.o
486. mv -f .deps/libcommon_la-hash_alph.Tpo .deps/libcommon_la-hash_alph.Plo
487. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm.lo -MD -MP -MF .deps/libmetameme_la-mhmm.Tpo -c -o libmetameme_la-mhmm.lo `test -f 'mhmm.c' || echo './'`mhmm.c
488. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-clustalw-io.lo -MD -MP -MF .deps/libmetameme_la-clustalw-io.Tpo -c clustalw-io.c -o libmetameme_la-clustalw-io.o >/dev/null 2>&1
489. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-metameme.lo -MD -MP -MF .deps/libmetameme_la-metameme.Tpo -c metameme.c -fPIC -DPIC -o .libs/libmetameme_la-metameme.o
490. karlin.c: In function 'karlin':
491. karlin.c:107:2: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
492. karlin.c:143:2: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
493. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm.lo -MD -MP -MF .deps/libmetameme_la-mhmm.Tpo -c mhmm.c -fPIC -DPIC -o .libs/libmetameme_la-mhmm.o
494. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fasta-io.lo -MD -MP -MF .deps/libmetameme_la-fasta-io.Tpo -c fasta-io.c -o libmetameme_la-fasta-io.o >/dev/null 2>&1
495. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-build-hmm.lo -MD -MP -MF .deps/libmetameme_la-build-hmm.Tpo -c build-hmm.c -o libmetameme_la-build-hmm.o >/dev/null 2>&1
496. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel_with_loss.lo -MD -MP -MF .deps/libmetameme_la-evomodel_with_loss.Tpo -c evomodel_with_loss.c -o libmetameme_la-evomodel_with_loss.o >/dev/null 2>&1
497. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-linked-list.lo -MD -MP -MF .deps/libmetameme_la-linked-list.Tpo -c linked-list.c -o libmetameme_la-linked-list.o >/dev/null 2>&1
498. mv -f .deps/libcommon_la-background.Tpo .deps/libcommon_la-background.Plo
499. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmms.lo -MD -MP -MF .deps/libmetameme_la-mhmms.Tpo -c -o libmetameme_la-mhmms.lo `test -f 'mhmms.c' || echo './'`mhmms.c
500. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-merger.lo -MD -MP -MF .deps/libmetameme_la-merger.Tpo -c merger.c -o libmetameme_la-merger.o >/dev/null 2>&1
501. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-metameme.lo -MD -MP -MF .deps/libmetameme_la-metameme.Tpo -c metameme.c -o libmetameme_la-metameme.o >/dev/null 2>&1
502. mv -f .deps/libcommon_la-utils.Tpo .deps/libcommon_la-utils.Plo
503. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm-state.lo -MD -MP -MF .deps/libmetameme_la-mhmm-state.Tpo -c -o libmetameme_la-mhmm-state.lo `test -f 'mhmm-state.c' || echo './'`mhmm-state.c
504. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-log-hmm.lo -MD -MP -MF .deps/libmetameme_la-log-hmm.Tpo -c log-hmm.c -o libmetameme_la-log-hmm.o >/dev/null 2>&1
505. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-karlin.lo -MD -MP -MF .deps/libmetameme_la-karlin.Tpo -c karlin.c -o libmetameme_la-karlin.o >/dev/null 2>&1
506. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-dp.lo -MD -MP -MF .deps/libmetameme_la-dp.Tpo -c dp.c -o libmetameme_la-dp.o >/dev/null 2>&1
507. mv -f .deps/libcommon_la-psp.Tpo .deps/libcommon_la-psp.Plo
508. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-motiph-scoring.lo -MD -MP -MF .deps/libmetameme_la-motiph-scoring.Tpo -c -o libmetameme_la-motiph-scoring.lo `test -f 'motiph-scoring.c' || echo './'`motiph-scoring.c
509. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmms.lo -MD -MP -MF .deps/libmetameme_la-mhmms.Tpo -c mhmms.c -fPIC -DPIC -o .libs/libmetameme_la-mhmms.o
510. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm-state.lo -MD -MP -MF .deps/libmetameme_la-mhmm-state.Tpo -c mhmm-state.c -fPIC -DPIC -o .libs/libmetameme_la-mhmm-state.o
511. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-match.lo -MD -MP -MF .deps/libmetameme_la-match.Tpo -c match.c -o libmetameme_la-match.o >/dev/null 2>&1
512. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT liblogo_la-ceqlogo.lo -MD -MP -MF .deps/liblogo_la-ceqlogo.Tpo -c ceqlogo.c -o liblogo_la-ceqlogo.o >/dev/null 2>&1
513. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-motiph-scoring.lo -MD -MP -MF .deps/libmetameme_la-motiph-scoring.Tpo -c motiph-scoring.c -fPIC -DPIC -o .libs/libmetameme_la-motiph-scoring.o
514. mv -f .deps/libmetameme_la-clustalw-io.Tpo .deps/libmetameme_la-clustalw-io.Plo
515. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-object-list.lo -MD -MP -MF .deps/libmetameme_la-object-list.Tpo -c -o libmetameme_la-object-list.lo `test -f 'object-list.c' || echo './'`object-list.c
516. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-gendb.lo -MD -MP -MF .deps/libmetameme_la-gendb.Tpo -c gendb.c -o libmetameme_la-gendb.o >/dev/null 2>&1
517. mv -f .deps/libmetameme_la-fasta-io.Tpo .deps/libmetameme_la-fasta-io.Plo
518. mv -f .deps/libmetameme_la-metameme.Tpo .deps/libmetameme_la-metameme.Plo
519. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-order.lo -MD -MP -MF .deps/libmetameme_la-order.Tpo -c -o libmetameme_la-order.lo `test -f 'order.c' || echo './'`order.c
520. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-params.lo -MD -MP -MF .deps/libmetameme_la-params.Tpo -c -o libmetameme_la-params.lo `test -f 'params.c' || echo './'`params.c
521. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-object-list.lo -MD -MP -MF .deps/libmetameme_la-object-list.Tpo -c object-list.c -fPIC -DPIC -o .libs/libmetameme_la-object-list.o
522. mv -f .deps/libmetameme_la-merger.Tpo .deps/libmetameme_la-merger.Plo
523. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-pssm.lo -MD -MP -MF .deps/libmetameme_la-pssm.Tpo -c -o libmetameme_la-pssm.lo `test -f 'pssm.c' || echo './'`pssm.c
524. mv -f .deps/libmetameme_la-linked-list.Tpo .deps/libmetameme_la-linked-list.Plo
525. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qsort.lo -MD -MP -MF .deps/libmetameme_la-qsort.Tpo -c -o libmetameme_la-qsort.lo `test -f 'qsort.c' || echo './'`qsort.c
526. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-evomodel.lo -MD -MP -MF .deps/libmetameme_la-evomodel.Tpo -c evomodel.c -o libmetameme_la-evomodel.o >/dev/null 2>&1
527. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-order.lo -MD -MP -MF .deps/libmetameme_la-order.Tpo -c order.c -fPIC -DPIC -o .libs/libmetameme_la-order.o
528. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm.lo -MD -MP -MF .deps/libmetameme_la-mhmm.Tpo -c mhmm.c -o libmetameme_la-mhmm.o >/dev/null 2>&1
529. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-params.lo -MD -MP -MF .deps/libmetameme_la-params.Tpo -c params.c -fPIC -DPIC -o .libs/libmetameme_la-params.o
530. mv -f .deps/libcommon_la-array.Tpo .deps/libcommon_la-array.Plo
531. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qvalue.lo -MD -MP -MF .deps/libmetameme_la-qvalue.Tpo -c -o libmetameme_la-qvalue.lo `test -f 'qvalue.c' || echo './'`qvalue.c
532. mv -f .deps/libmetameme_la-log-hmm.Tpo .deps/libmetameme_la-log-hmm.Plo
533. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-pssm.lo -MD -MP -MF .deps/libmetameme_la-pssm.Tpo -c pssm.c -fPIC -DPIC -o .libs/libmetameme_la-pssm.o
534. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ranksum_test.lo -MD -MP -MF .deps/libmetameme_la-ranksum_test.Tpo -c -o libmetameme_la-ranksum_test.lo `test -f 'ranksum_test.c' || echo './'`ranksum_test.c
535. mv -f .deps/libmetameme_la-evomodel_with_loss.Tpo .deps/libmetameme_la-evomodel_with_loss.Plo
536. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qsort.lo -MD -MP -MF .deps/libmetameme_la-qsort.Tpo -c qsort.c -fPIC -DPIC -o .libs/libmetameme_la-qsort.o
537. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-read-mhmm.lo -MD -MP -MF .deps/libmetameme_la-read-mhmm.Tpo -c -o libmetameme_la-read-mhmm.lo `test -f 'read-mhmm.c' || echo './'`read-mhmm.c
538. mv -f .deps/libmetameme_la-karlin.Tpo .deps/libmetameme_la-karlin.Plo
539. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-red-black-tree.lo -MD -MP -MF .deps/libmetameme_la-red-black-tree.Tpo -c -o libmetameme_la-red-black-tree.lo `test -f 'red-black-tree.c' || echo './'`red-black-tree.c
540. mv -f .deps/libmetameme_la-alignment.Tpo .deps/libmetameme_la-alignment.Plo
541. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-scored-sites.lo -MD -MP -MF .deps/libmetameme_la-scored-sites.Tpo -c -o libmetameme_la-scored-sites.lo `test -f 'scored-sites.c' || echo './'`scored-sites.c
542. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qvalue.lo -MD -MP -MF .deps/libmetameme_la-qvalue.Tpo -c qvalue.c -fPIC -DPIC -o .libs/libmetameme_la-qvalue.o
543. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ranksum_test.lo -MD -MP -MF .deps/libmetameme_la-ranksum_test.Tpo -c ranksum_test.c -fPIC -DPIC -o .libs/libmetameme_la-ranksum_test.o
544. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-read-mhmm.lo -MD -MP -MF .deps/libmetameme_la-read-mhmm.Tpo -c read-mhmm.c -fPIC -DPIC -o .libs/libmetameme_la-read-mhmm.o
545. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmm-state.lo -MD -MP -MF .deps/libmetameme_la-mhmm-state.Tpo -c mhmm-state.c -o libmetameme_la-mhmm-state.o >/dev/null 2>&1
546. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-red-black-tree.lo -MD -MP -MF .deps/libmetameme_la-red-black-tree.Tpo -c red-black-tree.c -fPIC -DPIC -o .libs/libmetameme_la-red-black-tree.o
547. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qsort.lo -MD -MP -MF .deps/libmetameme_la-qsort.Tpo -c qsort.c -o libmetameme_la-qsort.o >/dev/null 2>&1
548. mv -f .deps/libmetameme_la-match.Tpo .deps/libmetameme_la-match.Plo
549. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-object-list.lo -MD -MP -MF .deps/libmetameme_la-object-list.Tpo -c object-list.c -o libmetameme_la-object-list.o >/dev/null 2>&1
550. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-seq.lo -MD -MP -MF .deps/libmetameme_la-seq.Tpo -c -o libmetameme_la-seq.lo `test -f 'seq.c' || echo './'`seq.c
551. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-scored-sites.lo -MD -MP -MF .deps/libmetameme_la-scored-sites.Tpo -c scored-sites.c -fPIC -DPIC -o .libs/libmetameme_la-scored-sites.o
552. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-params.lo -MD -MP -MF .deps/libmetameme_la-params.Tpo -c params.c -o libmetameme_la-params.o >/dev/null 2>&1
553. mv -f .deps/libcommon_la-matrix.Tpo .deps/libcommon_la-matrix.Plo
554. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-simple-getopt.lo -MD -MP -MF .deps/libmetameme_la-simple-getopt.Tpo -c -o libmetameme_la-simple-getopt.lo `test -f 'simple-getopt.c' || echo './'`simple-getopt.c
555. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-seq.lo -MD -MP -MF .deps/libmetameme_la-seq.Tpo -c seq.c -fPIC -DPIC -o .libs/libmetameme_la-seq.o
556. mv -f .deps/libmetameme_la-dp.Tpo .deps/libmetameme_la-dp.Plo
557. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-string-list.lo -MD -MP -MF .deps/libmetameme_la-string-list.Tpo -c -o libmetameme_la-string-list.lo `test -f 'string-list.c' || echo './'`string-list.c
558. mv -f .deps/libcommon_la-meme-io.Tpo .deps/libcommon_la-meme-io.Plo
559. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-subst-matrix.lo -MD -MP -MF .deps/libmetameme_la-subst-matrix.Tpo -c -o libmetameme_la-subst-matrix.lo `test -f 'subst-matrix.c' || echo './'`subst-matrix.c
560. mv -f .deps/libmetameme_la-qsort.Tpo .deps/libmetameme_la-qsort.Plo
561. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-substmatrix-table.lo -MD -MP -MF .deps/libmetameme_la-substmatrix-table.Tpo -c -o libmetameme_la-substmatrix-table.lo `test -f 'substmatrix-table.c' || echo './'`substmatrix-table.c
562. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-order.lo -MD -MP -MF .deps/libmetameme_la-order.Tpo -c order.c -o libmetameme_la-order.o >/dev/null 2>&1
563. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-simple-getopt.lo -MD -MP -MF .deps/libmetameme_la-simple-getopt.Tpo -c simple-getopt.c -fPIC -DPIC -o .libs/libmetameme_la-simple-getopt.o
564. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-string-list.lo -MD -MP -MF .deps/libmetameme_la-string-list.Tpo -c string-list.c -fPIC -DPIC -o .libs/libmetameme_la-string-list.o
565. mv -f .deps/libmetameme_la-gendb.Tpo .deps/libmetameme_la-gendb.Plo
566. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-subst-matrix.lo -MD -MP -MF .deps/libmetameme_la-subst-matrix.Tpo -c subst-matrix.c -fPIC -DPIC -o .libs/libmetameme_la-subst-matrix.o
567. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tomtom.lo -MD -MP -MF .deps/libmetameme_la-tomtom.Tpo -c -o libmetameme_la-tomtom.lo `test -f 'tomtom.c' || echo './'`tomtom.c
568. read-mhmm.c: In function 'read_mhmm':
569. read-mhmm.c:743:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
570. read-mhmm.c: In function 'read_mhmm_state':
571. read-mhmm.c:75:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
572. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-substmatrix-table.lo -MD -MP -MF .deps/libmetameme_la-substmatrix-table.Tpo -c substmatrix-table.c -fPIC -DPIC -o .libs/libmetameme_la-substmatrix-table.o
573. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-qvalue.lo -MD -MP -MF .deps/libmetameme_la-qvalue.Tpo -c qvalue.c -o libmetameme_la-qvalue.o >/dev/null 2>&1
574. mv -f .deps/libmetameme_la-build-hmm.Tpo .deps/libmetameme_la-build-hmm.Plo
575. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tree.lo -MD -MP -MF .deps/libmetameme_la-tree.Tpo -c -o libmetameme_la-tree.lo `test -f 'tree.c' || echo './'`tree.c
576. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-fitevd.lo -MD -MP -MF .deps/libmetameme_la-fitevd.Tpo -c fitevd.c -o libmetameme_la-fitevd.o >/dev/null 2>&1
577. mv -f .deps/libmetameme_la-mhmm.Tpo .deps/libmetameme_la-mhmm.Plo
578. mv -f .deps/libmetameme_la-object-list.Tpo .deps/libmetameme_la-object-list.Plo
579. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-utils.lo -MD -MP -MF .deps/libmetameme_la-utils.Tpo -c -o libmetameme_la-utils.lo `test -f 'utils.c' || echo './'`utils.c
580. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-write-mhmm.lo -MD -MP -MF .deps/libmetameme_la-write-mhmm.Tpo -c -o libmetameme_la-write-mhmm.lo `test -f 'write-mhmm.c' || echo './'`write-mhmm.c
581. mv -f .deps/libmetameme_la-params.Tpo .deps/libmetameme_la-params.Plo
582. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT alphtype.o -MD -MP -MF .deps/alphtype.Tpo -c -o alphtype.o alphtype.c
583. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tomtom.lo -MD -MP -MF .deps/libmetameme_la-tomtom.Tpo -c tomtom.c -fPIC -DPIC -o .libs/libmetameme_la-tomtom.o
584. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-ranksum_test.lo -MD -MP -MF .deps/libmetameme_la-ranksum_test.Tpo -c ranksum_test.c -o libmetameme_la-ranksum_test.o >/dev/null 2>&1
585. mv -f .deps/libmetameme_la-mhmm-state.Tpo .deps/libmetameme_la-mhmm-state.Plo
586. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tree.lo -MD -MP -MF .deps/libmetameme_la-tree.Tpo -c tree.c -fPIC -DPIC -o .libs/libmetameme_la-tree.o
587. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ama-ama.o -MD -MP -MF .deps/ama-ama.Tpo -c -o ama-ama.o `test -f 'ama.c' || echo './'`ama.c
588. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-simple-getopt.lo -MD -MP -MF .deps/libmetameme_la-simple-getopt.Tpo -c simple-getopt.c -o libmetameme_la-simple-getopt.o >/dev/null 2>&1
589. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-utils.lo -MD -MP -MF .deps/libmetameme_la-utils.Tpo -c utils.c -fPIC -DPIC -o .libs/libmetameme_la-utils.o
590. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-write-mhmm.lo -MD -MP -MF .deps/libmetameme_la-write-mhmm.Tpo -c write-mhmm.c -fPIC -DPIC -o .libs/libmetameme_la-write-mhmm.o
591. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-motiph-scoring.lo -MD -MP -MF .deps/libmetameme_la-motiph-scoring.Tpo -c motiph-scoring.c -o libmetameme_la-motiph-scoring.o >/dev/null 2>&1
592. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-scored-sites.lo -MD -MP -MF .deps/libmetameme_la-scored-sites.Tpo -c scored-sites.c -o libmetameme_la-scored-sites.o >/dev/null 2>&1
593. mv -f .deps/alphtype.Tpo .deps/alphtype.Po
594. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT beadstring-beadstring.o -MD -MP -MF .deps/beadstring-beadstring.Tpo -c -o beadstring-beadstring.o `test -f 'beadstring.c' || echo './'`beadstring.c
595. tree.c: In function 'read_tree':
596. tree.c:571:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
597. mv -f .deps/libmetameme_la-order.Tpo .deps/libmetameme_la-order.Plo
598. tree.c: In function 'read_node':
599. tree.c:509:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
600. tree.c:540:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
601. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DCL_MAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ceqlogo-ceqlogo.o -MD -MP -MF .deps/ceqlogo-ceqlogo.Tpo -c -o ceqlogo-ceqlogo.o `test -f 'ceqlogo.c' || echo './'`ceqlogo.c
602. utils.c: In function 'open_command_pipe':
603. utils.c:255:5: warning: format not a string literal and no format arguments [-Wformat-security]
604. mv -f .deps/libmetameme_la-evomodel.Tpo .deps/libmetameme_la-evomodel.Plo
605. utils.c: In function 'date_and_time':
606. utils.c:676:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
607. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT clustalw_io-clustalw-io.o -MD -MP -MF .deps/clustalw_io-clustalw-io.Tpo -c -o clustalw_io-clustalw-io.o `test -f 'clustalw-io.c' || echo './'`clustalw-io.c
608. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-substmatrix-table.lo -MD -MP -MF .deps/libmetameme_la-substmatrix-table.Tpo -c substmatrix-table.c -o libmetameme_la-substmatrix-table.o >/dev/null 2>&1
609. mv -f .deps/libmetameme_la-simple-getopt.Tpo .deps/libmetameme_la-simple-getopt.Plo
610. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-mhmms.lo -MD -MP -MF .deps/libmetameme_la-mhmms.Tpo -c mhmms.c -o libmetameme_la-mhmms.o >/dev/null 2>&1
611. mv -f .deps/libmetameme_la-qvalue.Tpo .deps/libmetameme_la-qvalue.Plo
612. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT clustalw2fasta-clustalw2fasta.o -MD -MP -MF .deps/clustalw2fasta-clustalw2fasta.Tpo -c -o clustalw2fasta-clustalw2fasta.o `test -f 'clustalw2fasta.c' || echo './'`clustalw2fasta.c
613. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT clustalw2phylip-clustalw2phylip.o -MD -MP -MF .deps/clustalw2phylip-clustalw2phylip.Tpo -c -o clustalw2phylip-clustalw2phylip.o `test -f 'clustalw2phylip.c' || echo './'`clustalw2phylip.c
614. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-pssm.lo -MD -MP -MF .deps/libmetameme_la-pssm.Tpo -c pssm.c -o libmetameme_la-pssm.o >/dev/null 2>&1
615. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-subst-matrix.lo -MD -MP -MF .deps/libmetameme_la-subst-matrix.Tpo -c subst-matrix.c -o libmetameme_la-subst-matrix.o >/dev/null 2>&1
616. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-read-mhmm.lo -MD -MP -MF .deps/libmetameme_la-read-mhmm.Tpo -c read-mhmm.c -o libmetameme_la-read-mhmm.o >/dev/null 2>&1
617. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-red-black-tree.lo -MD -MP -MF .deps/libmetameme_la-red-black-tree.Tpo -c red-black-tree.c -o libmetameme_la-red-black-tree.o >/dev/null 2>&1
618. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-seq.lo -MD -MP -MF .deps/libmetameme_la-seq.Tpo -c seq.c -o libmetameme_la-seq.o >/dev/null 2>&1
619. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-cisml.lo -MD -MP -MF .deps/libmetameme_la-cisml.Tpo -c cisml.c -o libmetameme_la-cisml.o >/dev/null 2>&1
620. mv -f .deps/libmetameme_la-ranksum_test.Tpo .deps/libmetameme_la-ranksum_test.Plo
621. clustalw2fasta.c: In function 'main':
622. clustalw2fasta.c:106:5: warning: format not a string literal and no format arguments [-Wformat-security]
623. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT draw_mhmm-draw-mhmm.o -MD -MP -MF .deps/draw_mhmm-draw-mhmm.Tpo -c -o draw_mhmm-draw-mhmm.o `test -f 'draw-mhmm.c' || echo './'`draw-mhmm.c
624. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-string-list.lo -MD -MP -MF .deps/libmetameme_la-string-list.Tpo -c string-list.c -o libmetameme_la-string-list.o >/dev/null 2>&1
625. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-write-mhmm.lo -MD -MP -MF .deps/libmetameme_la-write-mhmm.Tpo -c write-mhmm.c -o libmetameme_la-write-mhmm.o >/dev/null 2>&1
626. ceqlogo.c: In function 'F_mkdir':
627. ceqlogo.c:1076:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
628. ceqlogo.c: In function 'F_rmdir':
629. ceqlogo.c:1068:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
630. ceqlogo.c: In function 'CL_create2':
631. ceqlogo.c:188:13: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
632. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tomtom.lo -MD -MP -MF .deps/libmetameme_la-tomtom.Tpo -c tomtom.c -o libmetameme_la-tomtom.o >/dev/null 2>&1
633. beadstring.c: In function 'process_command_line':
634. beadstring.c:1091:9: warning: format not a string literal and no format arguments [-Wformat-security]
635. beadstring.c:1102:5: warning: format not a string literal and no format arguments [-Wformat-security]
636. mv -f .deps/libmetameme_la-scored-sites.Tpo .deps/libmetameme_la-scored-sites.Plo
637. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT fasta_io-fasta-io.o -MD -MP -MF .deps/fasta_io-fasta-io.Tpo -c -o fasta_io-fasta-io.o `test -f 'fasta-io.c' || echo './'`fasta-io.c
638. mv -f .deps/clustalw2fasta-clustalw2fasta.Tpo .deps/clustalw2fasta-clustalw2fasta.Po
639. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT fimo-fimo.o -MD -MP -MF .deps/fimo-fimo.Tpo -c -o fimo-fimo.o `test -f 'fimo.c' || echo './'`fimo.c
640. mv -f .deps/libmetameme_la-substmatrix-table.Tpo .deps/libmetameme_la-substmatrix-table.Plo
641. draw-mhmm.c: In function 'main':
642. draw-mhmm.c:449:5: warning: format not a string literal and no format arguments [-Wformat-security]
643. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT fitevd-fitevd.o -MD -MP -MF .deps/fitevd-fitevd.Tpo -c -o fitevd-fitevd.o `test -f 'fitevd.c' || echo './'`fitevd.c
644. mv -f .deps/liblogo_la-ceqlogo.Tpo .deps/liblogo_la-ceqlogo.Plo
645. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT gendb-gendb.o -MD -MP -MF .deps/gendb-gendb.Tpo -c -o gendb-gendb.o `test -f 'gendb.c' || echo './'`gendb.c
646. mv -f .deps/clustalw_io-clustalw-io.Tpo .deps/clustalw_io-clustalw-io.Po
647. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT getsize.o -MD -MP -MF .deps/getsize.Tpo -c -o getsize.o getsize.c
648. mv -f .deps/ama-ama.Tpo .deps/ama-ama.Po
649. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-utils.lo -MD -MP -MF .deps/libmetameme_la-utils.Tpo -c utils.c -o libmetameme_la-utils.o >/dev/null 2>&1
650. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_alphabet.o -MD -MP -MF .deps/glam2-glam2_alphabet.Tpo -c -o glam2-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c
651. mv -f .deps/libmetameme_la-subst-matrix.Tpo .deps/libmetameme_la-subst-matrix.Plo
652. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_args.o -MD -MP -MF .deps/glam2-glam2_args.Tpo -c -o glam2-glam2_args.o `test -f 'glam2_args.c' || echo './'`glam2_args.c
653. fasta-io.c: In function 'main':
654. fasta-io.c:382:5: warning: format not a string literal and no format arguments [-Wformat-security]
655. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT libmetameme_la-tree.lo -MD -MP -MF .deps/libmetameme_la-tree.Tpo -c tree.c -o libmetameme_la-tree.o >/dev/null 2>&1
656. mv -f .deps/draw_mhmm-draw-mhmm.Tpo .deps/draw_mhmm-draw-mhmm.Po
657. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_column_sample.o -MD -MP -MF .deps/glam2-glam2_column_sample.Tpo -c -o glam2-glam2_column_sample.o `test -f 'glam2_column_sample.c' || echo './'`glam2_column_sample.c
658. glam2_alphabet.c: In function 'alphabet_read':
659. glam2_alphabet.c:66:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
660. glam2_alphabet.c:77:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
661. gendb.c: In function 'main':
662. gendb.c:419:5: warning: format not a string literal and no format arguments [-Wformat-security]
663. mv -f .deps/libmetameme_la-write-mhmm.Tpo .deps/libmetameme_la-write-mhmm.Plo
664. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_dirichlet.o -MD -MP -MF .deps/glam2-glam2_dirichlet.Tpo -c -o glam2-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c
665. mv -f .deps/libmetameme_la-motiph-scoring.Tpo .deps/libmetameme_la-motiph-scoring.Plo
666. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_dna_prior.o -MD -MP -MF .deps/glam2-glam2_dna_prior.Tpo -c -o glam2-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c
667. fimo.c: In function 'process_command_line':
668. fimo.c:281:5: warning: format not a string literal and no format arguments [-Wformat-security]
669. mv -f .deps/libmetameme_la-seq.Tpo .deps/libmetameme_la-seq.Plo
670. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_fasta.o -MD -MP -MF .deps/glam2-glam2_fasta.Tpo -c -o glam2-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c
671. mv -f .deps/libmetameme_la-read-mhmm.Tpo .deps/libmetameme_la-read-mhmm.Plo
672. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_glam2.o -MD -MP -MF .deps/glam2-glam2_glam2.Tpo -c -o glam2-glam2_glam2.o `test -f 'glam2_glam2.c' || echo './'`glam2_glam2.c
673. mv -f .deps/fasta_io-fasta-io.Tpo .deps/fasta_io-fasta-io.Po
674. mv -f .deps/glam2-glam2_alphabet.Tpo .deps/glam2-glam2_alphabet.Po
675. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_glam2_aln.o -MD -MP -MF .deps/glam2-glam2_glam2_aln.Tpo -c -o glam2-glam2_glam2_aln.o `test -f 'glam2_glam2_aln.c' || echo './'`glam2_glam2_aln.c
676. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_init.o -MD -MP -MF .deps/glam2-glam2_init.Tpo -c -o glam2-glam2_init.o `test -f 'glam2_init.c' || echo './'`glam2_init.c
677. mv -f .deps/libmetameme_la-red-black-tree.Tpo .deps/libmetameme_la-red-black-tree.Plo
678. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_output.o -MD -MP -MF .deps/glam2-glam2_output.Tpo -c -o glam2-glam2_output.o `test -f 'glam2_output.c' || echo './'`glam2_output.c
679. mv -f .deps/glam2-glam2_dna_prior.Tpo .deps/glam2-glam2_dna_prior.Po
680. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2-glam2_recode3_20comp.Tpo -c -o glam2-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c
681. mv -f .deps/glam2-glam2_args.Tpo .deps/glam2-glam2_args.Po
682. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_site_sample.o -MD -MP -MF .deps/glam2-glam2_site_sample.Tpo -c -o glam2-glam2_site_sample.o `test -f 'glam2_site_sample.c' || echo './'`glam2_site_sample.c
683. mv -f .deps/libmetameme_la-string-list.Tpo .deps/libmetameme_la-string-list.Plo
684. glam2_dirichlet.c: In function 'dmix_read':
685. glam2_dirichlet.c:282:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
686. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-glam2_util.o -MD -MP -MF .deps/glam2-glam2_util.Tpo -c -o glam2-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c
687. mv -f .deps/libmetameme_la-tomtom.Tpo .deps/libmetameme_la-tomtom.Plo
688. mv -f .deps/beadstring-beadstring.Tpo .deps/beadstring-beadstring.Po
689. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-utils.o -MD -MP -MF .deps/glam2-utils.Tpo -c -o glam2-utils.o `test -f 'utils.c' || echo './'`utils.c
690. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-matrix.o -MD -MP -MF .deps/glam2-matrix.Tpo -c -o glam2-matrix.o `test -f 'matrix.c' || echo './'`matrix.c
691. mv -f .deps/libmetameme_la-pssm.Tpo .deps/libmetameme_la-pssm.Plo
692. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-array.o -MD -MP -MF .deps/glam2-array.Tpo -c -o glam2-array.o `test -f 'array.c' || echo './'`array.c
693. mv -f .deps/clustalw2phylip-clustalw2phylip.Tpo .deps/clustalw2phylip-clustalw2phylip.Po
694. mv -f .deps/glam2-glam2_recode3_20comp.Tpo .deps/glam2-glam2_recode3_20comp.Po
695. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-io.o -MD -MP -MF .deps/glam2-io.Tpo -c -o glam2-io.o `test -f 'io.c' || echo './'`io.c
696. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2-ceqlogo.o -MD -MP -MF .deps/glam2-ceqlogo.Tpo -c -o glam2-ceqlogo.o `test -f 'ceqlogo.c' || echo './'`ceqlogo.c
697. glam2_glam2.c: In function 'main':
698. glam2_glam2.c:196:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
699. glam2_glam2.c:199:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
700. mv -f .deps/libmetameme_la-fitevd.Tpo .deps/libmetameme_la-fitevd.Plo
701. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_glam2format.o -MD -MP -MF .deps/glam2format-glam2_glam2format.Tpo -c -o glam2format-glam2_glam2format.o `test -f 'glam2_glam2format.c' || echo './'`glam2_glam2format.c
702. mv -f .deps/getsize.Tpo .deps/getsize.Po
703. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_alignment.o -MD -MP -MF .deps/glam2format-glam2_alignment.Tpo -c -o glam2format-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c
704. mv -f .deps/glam2-glam2_glam2_aln.Tpo .deps/glam2-glam2_glam2_aln.Po
705. utils.c: In function 'open_command_pipe':
706. utils.c:255:5: warning: format not a string literal and no format arguments [-Wformat-security]
707. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_fasta.o -MD -MP -MF .deps/glam2format-glam2_fasta.Tpo -c -o glam2format-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c
708. mv -f .deps/glam2-glam2_fasta.Tpo .deps/glam2-glam2_fasta.Po
709. utils.c: In function 'date_and_time':
710. utils.c:676:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
711. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2format-glam2_util.o -MD -MP -MF .deps/glam2format-glam2_util.Tpo -c -o glam2format-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c
712. mv -f .deps/gendb-gendb.Tpo .deps/gendb-gendb.Po
713. mv -f .deps/libmetameme_la-utils.Tpo .deps/libmetameme_la-utils.Plo
714. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_glam2mask.o -MD -MP -MF .deps/glam2_glam2mask.Tpo -c -o glam2_glam2mask.o glam2_glam2mask.c
715. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_alignment.o -MD -MP -MF .deps/glam2_alignment.Tpo -c -o glam2_alignment.o glam2_alignment.c
716. mv -f .deps/libmetameme_la-mhmms.Tpo .deps/libmetameme_la-mhmms.Plo
717. mv -f .deps/glam2-glam2_glam2.Tpo .deps/glam2-glam2_glam2.Po
718. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_fasta.o -MD -MP -MF .deps/glam2_fasta.Tpo -c -o glam2_fasta.o glam2_fasta.c
719. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2_util.o -MD -MP -MF .deps/glam2_util.Tpo -c -o glam2_util.o glam2_util.c
720. mv -f .deps/glam2-io.Tpo .deps/glam2-io.Po
721. mv -f .deps/fimo-fimo.Tpo .deps/fimo-fimo.Po
722. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_alignment.o -MD -MP -MF .deps/glam2scan-glam2_alignment.Tpo -c -o glam2scan-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c
723. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_alphabet.o -MD -MP -MF .deps/glam2scan-glam2_alphabet.Tpo -c -o glam2scan-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c
724. ceqlogo.c: In function 'F_mkdir':
725. ceqlogo.c:1076:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
726. ceqlogo.c: In function 'F_rmdir':
727. ceqlogo.c:1068:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
728. mv -f .deps/glam2-glam2_init.Tpo .deps/glam2-glam2_init.Po
729. mv -f .deps/glam2-glam2_dirichlet.Tpo .deps/glam2-glam2_dirichlet.Po
730. ceqlogo.c: In function 'CL_create2':
731. ceqlogo.c:188:13: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
732. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_dna_prior.o -MD -MP -MF .deps/glam2scan-glam2_dna_prior.Tpo -c -o glam2scan-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c
733. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_fasta.o -MD -MP -MF .deps/glam2scan-glam2_fasta.Tpo -c -o glam2scan-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c
734. mv -f .deps/glam2-glam2_output.Tpo .deps/glam2-glam2_output.Po
735. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_dirichlet.o -MD -MP -MF .deps/glam2scan-glam2_dirichlet.Tpo -c -o glam2scan-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c
736. mv -f .deps/glam2format-glam2_alignment.Tpo .deps/glam2format-glam2_alignment.Po
737. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_heap.o -MD -MP -MF .deps/glam2scan-glam2_heap.Tpo -c -o glam2scan-glam2_heap.o `test -f 'glam2_heap.c' || echo './'`glam2_heap.c
738. mv -f .deps/glam2scan-glam2_dna_prior.Tpo .deps/glam2scan-glam2_dna_prior.Po
739. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_motif.o -MD -MP -MF .deps/glam2scan-glam2_motif.Tpo -c -o glam2scan-glam2_motif.o `test -f 'glam2_motif.c' || echo './'`glam2_motif.c
740. mv -f .deps/libmetameme_la-tree.Tpo .deps/libmetameme_la-tree.Plo
741. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan.o -MD -MP -MF .deps/glam2scan-glam2_scan.Tpo -c -o glam2scan-glam2_scan.o `test -f 'glam2_scan.c' || echo './'`glam2_scan.c
742. mv -f .deps/glam2_alignment.Tpo .deps/glam2_alignment.Po
743. mv -f .deps/glam2-glam2_column_sample.Tpo .deps/glam2-glam2_column_sample.Po
744. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan_args.o -MD -MP -MF .deps/glam2scan-glam2_scan_args.Tpo -c -o glam2scan-glam2_scan_args.o `test -f 'glam2_scan_args.c' || echo './'`glam2_scan_args.c
745. glam2_alphabet.c: In function 'alphabet_read':
746. glam2_alphabet.c:66:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
747. glam2_alphabet.c:77:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
748. mv -f .deps/glam2_glam2mask.Tpo .deps/glam2_glam2mask.Po
749. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan_init.o -MD -MP -MF .deps/glam2scan-glam2_scan_init.Tpo -c -o glam2scan-glam2_scan_init.o `test -f 'glam2_scan_init.c' || echo './'`glam2_scan_init.c
750. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_scan_output.o -MD -MP -MF .deps/glam2scan-glam2_scan_output.Tpo -c -o glam2scan-glam2_scan_output.o `test -f 'glam2_scan_output.c' || echo './'`glam2_scan_output.c
751. mv -f .deps/glam2format-glam2_fasta.Tpo .deps/glam2format-glam2_fasta.Po
752. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_recode3_20comp.o -MD -MP -MF .deps/glam2scan-glam2_recode3_20comp.Tpo -c -o glam2scan-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c
753. mv -f .deps/glam2scan-glam2_alignment.Tpo .deps/glam2scan-glam2_alignment.Po
754. glam2_dirichlet.c: In function 'dmix_read':
755. glam2_dirichlet.c:282:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
756. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-glam2_util.o -MD -MP -MF .deps/glam2scan-glam2_util.Tpo -c -o glam2scan-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c
757. mv -f .deps/glam2format-glam2_glam2format.Tpo .deps/glam2format-glam2_glam2format.Po
758. mv -f .deps/ceqlogo-ceqlogo.Tpo .deps/ceqlogo-ceqlogo.Po
759. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-utils.o -MD -MP -MF .deps/glam2scan-utils.Tpo -c -o glam2scan-utils.o `test -f 'utils.c' || echo './'`utils.c
760. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT glam2scan-array.o -MD -MP -MF .deps/glam2scan-array.Tpo -c -o glam2scan-array.o `test -f 'array.c' || echo './'`array.c
761. mv -f .deps/glam2scan-glam2_alphabet.Tpo .deps/glam2scan-glam2_alphabet.Po
762. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT gomo-gomo.o -MD -MP -MF .deps/gomo-gomo.Tpo -c -o gomo-gomo.o `test -f 'gomo.c' || echo './'`gomo.c
763. mv -f .deps/glam2scan-glam2_heap.Tpo .deps/glam2scan-glam2_heap.Po
764. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT log_hmm-log-hmm.o -MD -MP -MF .deps/log_hmm-log-hmm.Tpo -c -o log_hmm-log-hmm.o `test -f 'log-hmm.c' || echo './'`log-hmm.c
765. mv -f .deps/glam2-utils.Tpo .deps/glam2-utils.Po
766. mv -f .deps/glam2_fasta.Tpo .deps/glam2_fasta.Po
767. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT diagram.o -MD -MP -MF .deps/diagram.Tpo -c -o diagram.o diagram.c
768. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT logodds.o -MD -MP -MF .deps/logodds.Tpo -c -o logodds.o logodds.c
769. mv -f .deps/glam2-glam2_site_sample.Tpo .deps/glam2-glam2_site_sample.Po
770. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mast.o -MD -MP -MF .deps/mast.Tpo -c -o mast.o mast.c
771. mv -f .deps/glam2scan-glam2_recode3_20comp.Tpo .deps/glam2scan-glam2_recode3_20comp.Po
772. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mast-util.o -MD -MP -MF .deps/mast-util.Tpo -c -o mast-util.o mast-util.c
773. mv -f .deps/glam2scan-glam2_motif.Tpo .deps/glam2scan-glam2_motif.Po
774. mv -f .deps/glam2scan-glam2_fasta.Tpo .deps/glam2scan-glam2_fasta.Po
775. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT motifs.o -MD -MP -MF .deps/motifs.Tpo -c -o motifs.o motifs.c
776. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pssm-distr.o -MD -MP -MF .deps/pssm-distr.Tpo -c -o pssm-distr.o pssm-distr.c
777. mv -f .deps/glam2scan-glam2_scan_output.Tpo .deps/glam2scan-glam2_scan_output.Po
778. mv -f .deps/glam2scan-glam2_scan_args.Tpo .deps/glam2scan-glam2_scan_args.Po
779. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT regress.o -MD -MP -MF .deps/regress.Tpo -c -o regress.o regress.c
780. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-alphabet.o -MD -MP -MF .deps/meme_bin-alphabet.Tpo -c -o meme_bin-alphabet.o `test -f 'alphabet.c' || echo './'`alphabet.c
781. mv -f .deps/glam2-glam2_util.Tpo .deps/glam2-glam2_util.Po
782. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-array-list.o -MD -MP -MF .deps/meme_bin-array-list.Tpo -c -o meme_bin-array-list.o `test -f 'array-list.c' || echo './'`array-list.c
783. utils.c: In function 'open_command_pipe':
784. utils.c:255:5: warning: format not a string literal and no format arguments [-Wformat-security]
785. utils.c: In function 'date_and_time':
786. utils.c:676:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
787. log-hmm.c: In function 'main':
788. log-hmm.c:354:5: warning: format not a string literal and no format arguments [-Wformat-security]
789. mv -f .deps/glam2scan-glam2_scan_init.Tpo .deps/glam2scan-glam2_scan_init.Po
790. mv -f .deps/glam2-array.Tpo .deps/glam2-array.Po
791. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-banner.o -MD -MP -MF .deps/meme_bin-banner.Tpo -c -o meme_bin-banner.o `test -f 'banner.c' || echo './'`banner.c
792. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-binary-search.o -MD -MP -MF .deps/meme_bin-binary-search.Tpo -c -o meme_bin-binary-search.o `test -f 'binary-search.c' || echo './'`binary-search.c
793. gomo.c: In function 'start_xml_output':
794. gomo.c:583:3: warning: format not a string literal and no format arguments [-Wformat-security]
795. mv -f .deps/glam2scan-glam2_scan.Tpo .deps/glam2scan-glam2_scan.Po
796. mv -f .deps/regress.Tpo .deps/regress.Po
797. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-branching_search.o -MD -MP -MF .deps/meme_bin-branching_search.Tpo -c -o meme_bin-branching_search.o `test -f 'branching_search.c' || echo './'`branching_search.c
798. mv -f .deps/glam2scan-glam2_dirichlet.Tpo .deps/glam2scan-glam2_dirichlet.Po
799. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-calculate_p_y.o -MD -MP -MF .deps/meme_bin-calculate_p_y.Tpo -c -o meme_bin-calculate_p_y.o `test -f 'calculate_p_y.c' || echo './'`calculate_p_y.c
800. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-discretize.o -MD -MP -MF .deps/meme_bin-discretize.Tpo -c -o meme_bin-discretize.o `test -f 'discretize.c' || echo './'`discretize.c
801. gomo.c: In function 'process_cmd_line':
802. gomo.c:1573:5: warning: format not a string literal and no format arguments [-Wformat-security]
803. mv -f .deps/diagram.Tpo .deps/diagram.Po
804. mv -f .deps/pssm-distr.Tpo .deps/pssm-distr.Po
805. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-display.o -MD -MP -MF .deps/meme_bin-display.Tpo -c -o meme_bin-display.o `test -f 'display.c' || echo './'`display.c
806. mv -f .deps/glam2-matrix.Tpo .deps/glam2-matrix.Po
807. mv -f .deps/glam2format-glam2_util.Tpo .deps/glam2format-glam2_util.Po
808. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-dpalign.o -MD -MP -MF .deps/meme_bin-dpalign.Tpo -c -o meme_bin-dpalign.o `test -f 'dpalign.c' || echo './'`dpalign.c
809. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-em.o -MD -MP -MF .deps/meme_bin-em.Tpo -c -o meme_bin-em.o `test -f 'em.c' || echo './'`em.c
810. mv -f .deps/meme_bin-binary-search.Tpo .deps/meme_bin-binary-search.Po
811. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-hash_table.o -MD -MP -MF .deps/meme_bin-hash_table.Tpo -c -o meme_bin-hash_table.o `test -f 'hash_table.c' || echo './'`hash_table.c
812. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-init.o -MD -MP -MF .deps/meme_bin-init.Tpo -c -o meme_bin-init.o `test -f 'init.c' || echo './'`init.c
813. mast.c: In function 'print_mast_results':
814. mast.c:1165:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
815. mv -f .deps/log_hmm-log-hmm.Tpo .deps/log_hmm-log-hmm.Po
816. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-justlike.o -MD -MP -MF .deps/meme_bin-justlike.Tpo -c -o meme_bin-justlike.o `test -f 'justlike.c' || echo './'`justlike.c
817. mv -f .deps/motifs.Tpo .deps/motifs.Po
818. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-likelihood.o -MD -MP -MF .deps/meme_bin-likelihood.Tpo -c -o meme_bin-likelihood.o `test -f 'likelihood.c' || echo './'`likelihood.c
819. mv -f .deps/glam2_util.Tpo .deps/glam2_util.Po
820. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-linked-list.o -MD -MP -MF .deps/meme_bin-linked-list.Tpo -c -o meme_bin-linked-list.o `test -f 'linked-list.c' || echo './'`linked-list.c
821. mv -f .deps/meme_bin-banner.Tpo .deps/meme_bin-banner.Po
822. mv -f .deps/meme_bin-array-list.Tpo .deps/meme_bin-array-list.Po
823. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-llr.o -MD -MP -MF .deps/meme_bin-llr.Tpo -c -o meme_bin-llr.o `test -f 'llr.c' || echo './'`llr.c
824. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-logodds.o -MD -MP -MF .deps/meme_bin-logodds.Tpo -c -o meme_bin-logodds.o `test -f 'logodds.c' || echo './'`logodds.c
825. mv -f .deps/fitevd-fitevd.Tpo .deps/fitevd-fitevd.Po
826. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-logs.o -MD -MP -MF .deps/meme_bin-logs.Tpo -c -o meme_bin-logs.o `test -f 'logs.c' || echo './'`logs.c
827. mv -f .deps/meme_bin-alphabet.Tpo .deps/meme_bin-alphabet.Po
828. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-mast-util.o -MD -MP -MF .deps/meme_bin-mast-util.Tpo -c -o meme_bin-mast-util.o `test -f 'mast-util.c' || echo './'`mast-util.c
829. mv -f .deps/libmetameme_la-cisml.Tpo .deps/libmetameme_la-cisml.Plo
830. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-meme.o -MD -MP -MF .deps/meme_bin-meme.Tpo -c -o meme_bin-meme.o `test -f 'meme.c' || echo './'`meme.c
831. mv -f .deps/glam2scan-utils.Tpo .deps/glam2scan-utils.Po
832. mv -f .deps/meme_bin-justlike.Tpo .deps/meme_bin-justlike.Po
833. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-meme-print-html.o -MD -MP -MF .deps/meme_bin-meme-print-html.Tpo -c -o meme_bin-meme-print-html.o `test -f 'meme-print-html.c' || echo './'`meme-print-html.c
834. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-meme_util.o -MD -MP -MF .deps/meme_bin-meme_util.Tpo -c -o meme_bin-meme_util.o `test -f 'meme_util.c' || echo './'`meme_util.c
835. mv -f .deps/meme_bin-branching_search.Tpo .deps/meme_bin-branching_search.Po
836. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-merger.o -MD -MP -MF .deps/meme_bin-merger.Tpo -c -o meme_bin-merger.o `test -f 'merger.c' || echo './'`merger.c
837. mv -f .deps/meme_bin-hash_table.Tpo .deps/meme_bin-hash_table.Po
838. mv -f .deps/meme_bin-em.Tpo .deps/meme_bin-em.Po
839. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-message.o -MD -MP -MF .deps/meme_bin-message.Tpo -c -o meme_bin-message.o `test -f 'message.c' || echo './'`message.c
840. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-motifs.o -MD -MP -MF .deps/meme_bin-motifs.Tpo -c -o meme_bin-motifs.o `test -f 'motifs.c' || echo './'`motifs.c
841. mv -f .deps/glam2scan-glam2_util.Tpo .deps/glam2scan-glam2_util.Po
842. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-mp.o -MD -MP -MF .deps/meme_bin-mp.Tpo -c -o meme_bin-mp.o `test -f 'mp.c' || echo './'`mp.c
843. init.c: In function 'init_meme':
844. init.c:698:38: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
845. mv -f .deps/meme_bin-linked-list.Tpo .deps/meme_bin-linked-list.Po
846. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-oops.o -MD -MP -MF .deps/meme_bin-oops.Tpo -c -o meme_bin-oops.o `test -f 'oops.c' || echo './'`oops.c
847. mv -f .deps/meme_bin-message.Tpo .deps/meme_bin-message.Po
848. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-partition.o -MD -MP -MF .deps/meme_bin-partition.Tpo -c -o meme_bin-partition.o `test -f 'partition.c' || echo './'`partition.c
849. mv -f .deps/meme_bin-likelihood.Tpo .deps/meme_bin-likelihood.Po
850. mv -f .deps/meme_bin-logs.Tpo .deps/meme_bin-logs.Po
851. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-prior.o -MD -MP -MF .deps/meme_bin-prior.Tpo -c -o meme_bin-prior.o `test -f 'prior.c' || echo './'`prior.c
852. mv -f .deps/meme_bin-mp.Tpo .deps/meme_bin-mp.Po
853. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-pssm-distr.o -MD -MP -MF .deps/meme_bin-pssm-distr.Tpo -c -o meme_bin-pssm-distr.o `test -f 'pssm-distr.c' || echo './'`pssm-distr.c
854. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-read_seq_file.o -MD -MP -MF .deps/meme_bin-read_seq_file.Tpo -c -o meme_bin-read_seq_file.o `test -f 'read_seq_file.c' || echo './'`read_seq_file.c
855. mv -f .deps/meme_bin-calculate_p_y.Tpo .deps/meme_bin-calculate_p_y.Po
856. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-red-black-tree.o -MD -MP -MF .deps/meme_bin-red-black-tree.Tpo -c -o meme_bin-red-black-tree.o `test -f 'red-black-tree.c' || echo './'`red-black-tree.c
857. mv -f .deps/meme_bin-discretize.Tpo .deps/meme_bin-discretize.Po
858. mv -f .deps/glam2scan-array.Tpo .deps/glam2scan-array.Po
859. mv -f .deps/glam2-ceqlogo.Tpo .deps/glam2-ceqlogo.Po
860. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-regress.o -MD -MP -MF .deps/meme_bin-regress.Tpo -c -o meme_bin-regress.o `test -f 'regress.c' || echo './'`regress.c
861. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-seed.o -MD -MP -MF .deps/meme_bin-seed.Tpo -c -o meme_bin-seed.o `test -f 'seed.c' || echo './'`seed.c
862. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-seed_diffs.o -MD -MP -MF .deps/meme_bin-seed_diffs.Tpo -c -o meme_bin-seed_diffs.o `test -f 'seed_diffs.c' || echo './'`seed_diffs.c
863. mv -f .deps/logodds.Tpo .deps/logodds.Po
864. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-seq2theta.o -MD -MP -MF .deps/meme_bin-seq2theta.Tpo -c -o meme_bin-seq2theta.o `test -f 'seq2theta.c' || echo './'`seq2theta.c
865. mv -f .deps/meme_bin-meme-print-html.Tpo .deps/meme_bin-meme-print-html.Po
866. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-sp_matrix.o -MD -MP -MF .deps/meme_bin-sp_matrix.Tpo -c -o meme_bin-sp_matrix.o `test -f 'sp_matrix.c' || echo './'`sp_matrix.c
867. meme.c: In function 'main':
868. meme.c:179:35: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
869. mv -f .deps/meme_bin-merger.Tpo .deps/meme_bin-merger.Po
870. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-starts.o -MD -MP -MF .deps/meme_bin-starts.Tpo -c -o meme_bin-starts.o `test -f 'starts.c' || echo './'`starts.c
871. mv -f .deps/mast-util.Tpo .deps/mast-util.Po
872. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-string-list.o -MD -MP -MF .deps/meme_bin-string-list.Tpo -c -o meme_bin-string-list.o `test -f 'string-list.c' || echo './'`string-list.c
873. prior.c:284:1: warning: variably modified 'lgam_array1' at file scope [enabled by default]
874. prior.c:285:1: warning: variably modified 'lgam_array2' at file scope [enabled by default]
875. prior.c: In function 'read_PriorLib':
876. prior.c:82:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
877. prior.c:92:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
878. prior.c:121:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
879. prior.c:124:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
880. prior.c:125:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
881. prior.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
882. prior.c:130:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
883. prior.c:135:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
884. prior.c:137:23: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
885. prior.c:142:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
886. prior.c:143:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
887. prior.c:146:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
888. prior.c:147:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
889. prior.c:150:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
890. prior.c:156:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
891. mv -f .deps/meme_bin-partition.Tpo .deps/meme_bin-partition.Po
892. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-subseq7.o -MD -MP -MF .deps/meme_bin-subseq7.Tpo -c -o meme_bin-subseq7.o `test -f 'subseq7.c' || echo './'`subseq7.c
893. mv -f .deps/meme_bin-motifs.Tpo .deps/meme_bin-motifs.Po
894. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-tcm.o -MD -MP -MF .deps/meme_bin-tcm.Tpo -c -o meme_bin-tcm.o `test -f 'tcm.c' || echo './'`tcm.c
895. mv -f .deps/meme_bin-regress.Tpo .deps/meme_bin-regress.Po
896. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_bin-verbosity.o -MD -MP -MF .deps/meme_bin-verbosity.Tpo -c -o meme_bin-verbosity.o `test -f 'verbosity.c' || echo './'`verbosity.c
897. mv -f .deps/meme_bin-pssm-distr.Tpo .deps/meme_bin-pssm-distr.Po
898. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_io-meme-io.o -MD -MP -MF .deps/meme_io-meme-io.Tpo -c -o meme_io-meme-io.o `test -f 'meme-io.c' || echo './'`meme-io.c
899. mv -f .deps/meme_bin-dpalign.Tpo .deps/meme_bin-dpalign.Po
900. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_xml_html-meme-xml-html.o -MD -MP -MF .deps/meme_xml_html-meme-xml-html.Tpo -c -o meme_xml_html-meme-xml-html.o `test -f 'meme-xml-html.c' || echo './'`meme-xml-html.c
901. mv -f .deps/meme_bin-seed.Tpo .deps/meme_bin-seed.Po
902. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT meme_xml_html-meme-print-html.o -MD -MP -MF .deps/meme_xml_html-meme-print-html.Tpo -c -o meme_xml_html-meme-print-html.o `test -f 'meme-print-html.c' || echo './'`meme-print-html.c
903. mv -f .deps/meme_bin-prior.Tpo .deps/meme_bin-prior.Po
904. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmm-mhmm.o -MD -MP -MF .deps/mhmm-mhmm.Tpo -c -o mhmm-mhmm.o `test -f 'mhmm.c' || echo './'`mhmm.c
905. mv -f .deps/meme_bin-verbosity.Tpo .deps/meme_bin-verbosity.Po
906. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmm_io-mhmm-io.o -MD -MP -MF .deps/mhmm_io-mhmm-io.Tpo -c -o mhmm_io-mhmm-io.o `test -f 'mhmm-io.c' || echo './'`mhmm-io.c
907. mv -f .deps/meme_bin-meme.Tpo .deps/meme_bin-meme.Po
908. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmme.o -MD -MP -MF .deps/mhmme.Tpo -c -o mhmme.o mhmme.c
909. mv -f .deps/meme_bin-starts.Tpo .deps/meme_bin-starts.Po
910. mv -f .deps/meme_bin-logodds.Tpo .deps/meme_bin-logodds.Po
911. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmms-mhmms.o -MD -MP -MF .deps/mhmms-mhmms.Tpo -c -o mhmms-mhmms.o `test -f 'mhmms.c' || echo './'`mhmms.c
912. mv -f .deps/meme_bin-read_seq_file.Tpo .deps/meme_bin-read_seq_file.Po
913. mv -f .deps/meme_bin-seq2theta.Tpo .deps/meme_bin-seq2theta.Po
914. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT mhmmscan-mhmmscan.o -MD -MP -MF .deps/mhmmscan-mhmmscan.Tpo -c -o mhmmscan-mhmmscan.o `test -f 'mhmmscan.c' || echo './'`mhmmscan.c
915. mv -f .deps/meme_bin-meme_util.Tpo .deps/meme_bin-meme_util.Po
916. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT motiph-motiph.o -MD -MP -MF .deps/motiph-motiph.Tpo -c -o motiph-motiph.o `test -f 'motiph.c' || echo './'`motiph.c
917. mv -f .deps/meme_bin-seed_diffs.Tpo .deps/meme_bin-seed_diffs.Po
918. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT pmp_bf-pmp_bf.o -MD -MP -MF .deps/pmp_bf-pmp_bf.Tpo -c -o pmp_bf-pmp_bf.o `test -f 'pmp_bf.c' || echo './'`pmp_bf.c
919. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT readseq.o -MD -MP -MF .deps/readseq.Tpo -c -o readseq.o readseq.c
920. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ureadseq.o -MD -MP -MF .deps/ureadseq.Tpo -c -o ureadseq.o ureadseq.c
921. mv -f .deps/gomo-gomo.Tpo .deps/gomo-gomo.Po
922. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DSHADOW -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT shadow-shadow.o -MD -MP -MF .deps/shadow-shadow.Tpo -c -o shadow-shadow.o `test -f 'shadow.c' || echo './'`shadow.c
923. mv -f .deps/meme_bin-oops.Tpo .deps/meme_bin-oops.Po
924. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT tomtom-tomtom.o -MD -MP -MF .deps/tomtom-tomtom.Tpo -c -o tomtom-tomtom.o `test -f 'tomtom.c' || echo './'`tomtom.c
925. mhmm-io.c: In function 'main':
926. mhmm-io.c:67:5: warning: format not a string literal and no format arguments [-Wformat-security]
927. mv -f .deps/meme_xml_html-meme-xml-html.Tpo .deps/meme_xml_html-meme-xml-html.Po
928. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT tree-tree.o -MD -MP -MF .deps/tree-tree.Tpo -c -o tree-tree.o `test -f 'tree.c' || echo './'`tree.c
929. meme-io.c: In function 'main':
930. meme-io.c:1581:5: warning: format not a string literal and no format arguments [-Wformat-security]
931. mhmme.c: In function 'main':
932. mhmme.c:171:5: warning: format not a string literal and no format arguments [-Wformat-security]
933. mv -f .deps/meme_xml_html-meme-print-html.Tpo .deps/meme_xml_html-meme-print-html.Po
934. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT qvalue-qvalue.o -MD -MP -MF .deps/qvalue-qvalue.Tpo -c -o qvalue-qvalue.o `test -f 'qvalue.c' || echo './'`qvalue.c
935. mv -f .deps/meme_bin-mast-util.Tpo .deps/meme_bin-mast-util.Po
936. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT ranksum_test-ranksum_test.o -MD -MP -MF .deps/ranksum_test-ranksum_test.Tpo -c -o ranksum_test-ranksum_test.o `test -f 'ranksum_test.c' || echo './'`ranksum_test.c
937. mhmm.c: In function 'main':
938. mhmm.c:826:5: warning: format not a string literal and no format arguments [-Wformat-security]
939. mv -f .deps/mhmm_io-mhmm-io.Tpo .deps/mhmm_io-mhmm-io.Po
940. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT reconcile_tree_alignment-reconcile-tree-alignment.o -MD -MP -MF .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo -c -o reconcile_tree_alignment-reconcile-tree-alignment.o `test -f 'reconcile-tree-alignment.c' || echo './'`reconcile-tree-alignment.c
941. readseq.c: In function 'usage':
942. readseq.c:333:3: warning: format not a string literal and no format arguments [-Wformat-security]
943. mv -f .deps/meme_bin-red-black-tree.Tpo .deps/meme_bin-red-black-tree.Po
944. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT reduce_alignment-reduce-alignment.o -MD -MP -MF .deps/reduce_alignment-reduce-alignment.Tpo -c -o reduce_alignment-reduce-alignment.o `test -f 'reduce-alignment.c' || echo './'`reduce-alignment.c
945. readseq.c: In function 'main':
946. readseq.c:781:3: warning: format not a string literal and no format arguments [-Wformat-security]
947. readseq.c:981:15: warning: format not a string literal and no format arguments [-Wformat-security]
948. readseq.c:774:43: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
949. readseq.c:788:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
950. readseq.c:853:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
951. readseq.c:899:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
952. readseq.c:925:20: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
953. mv -f .deps/meme_bin-tcm.Tpo .deps/meme_bin-tcm.Po
954. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT remove_alignment_gaps-remove-alignment-gaps.o -MD -MP -MF .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo -c -o remove_alignment_gaps-remove-alignment-gaps.o `test -f 'remove-alignment-gaps.c' || echo './'`remove-alignment-gaps.c
955. readseq.c: In function 'chooseFormat':
956. readseq.c:424:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
957. mv -f .deps/mhmme.Tpo .deps/mhmme.Po
958. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -MT xsltproc_lite-xsltproc_lite.o -MD -MP -MF .deps/xsltproc_lite-xsltproc_lite.Tpo -c -o xsltproc_lite-xsltproc_lite.o `test -f 'xsltproc_lite.c' || echo './'`xsltproc_lite.c
959. mv -f .deps/meme_bin-sp_matrix.Tpo .deps/meme_bin-sp_matrix.Po
960. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o liblogo.la liblogo_la-ceqlogo.lo -lmpi -lm
961. mv -f .deps/meme_bin-string-list.Tpo .deps/meme_bin-string-list.Po
962. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o libcommon.la libcommon_la-array.lo libcommon_la-background.lo libcommon_la-hash_table.lo libcommon_la-hash_alph.lo libcommon_la-heap.lo libcommon_la-io.lo libcommon_la-meme-io.lo libcommon_la-matrix.lo libcommon_la-motif.lo libcommon_la-psp.lo libcommon_la-rdb-matrix.lo libcommon_la-read_sequence.lo libcommon_la-read_csv.lo libcommon_la-read_tamo.lo libcommon_la-utils.lo libcommon_la-xml-util.lo libcommon_la-zscore.lo -lxml2 -lz -lm -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lmpi -lm
963. mv -f .deps/meme_bin-llr.Tpo .deps/meme_bin-llr.Po
964. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o glam2-utils.o glam2-matrix.o glam2-array.o glam2-io.o glam2-ceqlogo.o -lmpi -lm
965. tree.c: In function 'main':
966. tree.c:1271:5: warning: format not a string literal and no format arguments [-Wformat-security]
967. tree.c: In function 'read_tree':
968. tree.c:571:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
969. ranksum_test.c: In function 'main':
970. ranksum_test.c:644:5: warning: format not a string literal and no format arguments [-Wformat-security]
971. tree.c: In function 'read_node':
972. tree.c:509:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
973. tree.c:540:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
974. qvalue.c: In function 'main':
975. qvalue.c:564:5: warning: format not a string literal and no format arguments [-Wformat-security]
976. pmp_bf.c: In function 'main':
977. pmp_bf.c:175:5: warning: format not a string literal and no format arguments [-Wformat-security]
978. mhmmscan.c: In function 'main':
979. mhmmscan.c:593:7: warning: format not a string literal and no format arguments [-Wformat-security]
980. mv -f .deps/meme_bin-subseq7.Tpo .deps/meme_bin-subseq7.Po
981. motiph.c: In function 'main':
982. motiph.c:348:5: warning: format not a string literal and no format arguments [-Wformat-security]
983. mhmms.c: In function 'main':
984. mhmms.c:1486:7: warning: format not a string literal and no format arguments [-Wformat-security]
985. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o glam2scan-utils.o glam2scan-array.o -lmpi -lm
986. mv -f .deps/reconcile_tree_alignment-reconcile-tree-alignment.Tpo .deps/reconcile_tree_alignment-reconcile-tree-alignment.Po
987. shadow.c: In function 'main':
988. shadow.c:256:5: warning: format not a string literal and no format arguments [-Wformat-security]
989. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o meme-xml-html meme_xml_html-meme-xml-html.o meme_xml_html-meme-print-html.o -lxml2 -lz -lm -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lmpi -lm
990. mv -f .deps/reduce_alignment-reduce-alignment.Tpo .deps/reduce_alignment-reduce-alignment.Po
991. mv -f .deps/remove_alignment_gaps-remove-alignment-gaps.Tpo .deps/remove_alignment_gaps-remove-alignment-gaps.Po
992. xsltproc_lite.c: In function 'main':
993. xsltproc_lite.c:21:5: warning: format not a string literal and no format arguments [-Wformat-security]
994. mv -f .deps/xsltproc_lite-xsltproc_lite.Tpo .deps/xsltproc_lite-xsltproc_lite.Po
995. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o xsltproc_lite xsltproc_lite-xsltproc_lite.o -lxml2 -lz -lm -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lmpi -lm
996. libtool: link: x86_64-pc-linux-gnu-ar cru .libs/liblogo.a .libs/liblogo_la-ceqlogo.o
997. mv -f .deps/meme_bin-init.Tpo .deps/meme_bin-init.Po
998. mv -f .deps/pmp_bf-pmp_bf.Tpo .deps/pmp_bf-pmp_bf.Po
999. libtool: link: x86_64-pc-linux-gnu-ranlib .libs/liblogo.a
1000. mv -f .deps/mast.Tpo .deps/mast.Po
1001. mv -f .deps/ranksum_test-ranksum_test.Tpo .deps/ranksum_test-ranksum_test.Po
1002. libtool: link: ( cd ".libs" && rm -f "liblogo.la" && ln -s "../liblogo.la" "liblogo.la" )
1003. libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libcommon.a .libs/libcommon_la-array.o .libs/libcommon_la-background.o .libs/libcommon_la-hash_table.o .libs/libcommon_la-hash_alph.o .libs/libcommon_la-heap.o .libs/libcommon_la-io.o .libs/libcommon_la-meme-io.o .libs/libcommon_la-matrix.o .libs/libcommon_la-motif.o .libs/libcommon_la-psp.o .libs/libcommon_la-rdb-matrix.o .libs/libcommon_la-read_sequence.o .libs/libcommon_la-read_csv.o .libs/libcommon_la-read_tamo.o .libs/libcommon_la-utils.o .libs/libcommon_la-xml-util.o .libs/libcommon_la-zscore.o
1004. mv -f .deps/mhmm-mhmm.Tpo .deps/mhmm-mhmm.Po
1005. mv -f .deps/qvalue-qvalue.Tpo .deps/qvalue-qvalue.Po
1006. libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libcommon.a
1007. mv -f .deps/shadow-shadow.Tpo .deps/shadow-shadow.Po
1008. libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../libcommon.la" "libcommon.la" )
1009. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o glam2-utils.o glam2-matrix.o glam2-array.o glam2-io.o glam2-ceqlogo.o -Wl,--as-needed /usr/lib64/libmpi.so -L/usr/lib64 /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1010. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o libmetameme.la libmetameme_la-ama_scan.lo libmetameme_la-alignment.lo libmetameme_la-alphabet.lo libmetameme_la-array-list.lo libmetameme_la-beadstring-xml.lo libmetameme_la-binary-search.lo libmetameme_la-build-hmm.lo libmetameme_la-cisml.lo libmetameme_la-clustalw-io.lo libmetameme_la-dp.lo libmetameme_la-evomodel.lo libmetameme_la-evomodel_with_loss.lo libmetameme_la-fasta-io.lo libmetameme_la-fitevd.lo libmetameme_la-gendb.lo libmetameme_la-karlin.lo libmetameme_la-linked-list.lo libmetameme_la-log-hmm.lo libmetameme_la-match.lo libmetameme_la-merger.lo libmetameme_la-metameme.lo libmetameme_la-mhmm.lo libmetameme_la-mhmms.lo libmetameme_la-mhmm-state.lo libmetameme_la-motiph-scoring.lo libmetameme_la-object-list.lo libmetameme_la-order.lo libmetameme_la-params.lo libmetameme_la-pssm.lo libmetameme_la-qsort.lo libmetameme_la-qvalue.lo libmetameme_la-ranksum_test.lo libmetameme_la-read-mhmm.lo libmetameme_la-red-black-tree.lo libmetameme_la-scored-sites.lo libmetameme_la-seq.lo libmetameme_la-simple-getopt.lo libmetameme_la-string-list.lo libmetameme_la-subst-matrix.lo libmetameme_la-substmatrix-table.lo libmetameme_la-tomtom.lo libmetameme_la-tree.lo libmetameme_la-utils.lo libmetameme_la-write-mhmm.lo libcommon.la liblogo.la -lxml2 -lz -lm -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lmpi -lm
1011. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o alphtype alphtype.o libcommon.la -lmpi -lm
1012. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o getsize getsize.o libcommon.la -lmpi -lm
1013. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o libcommon.la -lmpi -lm
1014. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o glam2mask glam2_glam2mask.o glam2_alignment.o glam2_fasta.o glam2_util.o libcommon.la -lmpi -lm
1015. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o mast.bin diagram.o logodds.o mast.o mast-util.o motifs.o pssm-distr.o regress.o libcommon.la -lmpi -lm
1016. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o glam2scan-utils.o glam2scan-array.o -Wl,--as-needed /usr/lib64/libmpi.so -L/usr/lib64 /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1017. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-xml-html meme_xml_html-meme-xml-html.o meme_xml_html-meme-print-html.o -Wl,--as-needed -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1018. mv -f .deps/motiph-motiph.Tpo .deps/motiph-motiph.Po
1019. mv -f .deps/mhmmscan-mhmmscan.Tpo .deps/mhmmscan-mhmmscan.Po
1020. mv -f .deps/tree-tree.Tpo .deps/tree-tree.Po
1021. mv -f .deps/meme_bin-display.Tpo .deps/meme_bin-display.Po
1022. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o meme.bin meme_bin-alphabet.o meme_bin-array-list.o meme_bin-banner.o meme_bin-binary-search.o meme_bin-branching_search.o meme_bin-calculate_p_y.o meme_bin-discretize.o meme_bin-display.o meme_bin-dpalign.o meme_bin-em.o meme_bin-hash_table.o meme_bin-init.o meme_bin-justlike.o meme_bin-likelihood.o meme_bin-linked-list.o meme_bin-llr.o meme_bin-logodds.o meme_bin-logs.o meme_bin-mast-util.o meme_bin-meme.o meme_bin-meme-print-html.o meme_bin-meme_util.o meme_bin-merger.o meme_bin-message.o meme_bin-motifs.o meme_bin-mp.o meme_bin-oops.o meme_bin-partition.o meme_bin-prior.o meme_bin-pssm-distr.o meme_bin-read_seq_file.o meme_bin-red-black-tree.o meme_bin-regress.o meme_bin-seed.o meme_bin-seed_diffs.o meme_bin-seq2theta.o meme_bin-sp_matrix.o meme_bin-starts.o meme_bin-string-list.o meme_bin-subseq7.o meme_bin-tcm.o meme_bin-verbosity.o liblogo.la libcommon.la -lxml2 -lz -lm -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lmpi -lm
1023. mv -f .deps/meme_io-meme-io.Tpo .deps/meme_io-meme-io.Po
1024. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o xsltproc_lite xsltproc_lite-xsltproc_lite.o -Wl,--as-needed -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1025. mv -f .deps/readseq.Tpo .deps/readseq.Po
1026. mv -f .deps/tomtom-tomtom.Tpo .deps/tomtom-tomtom.Po
1027. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o alphtype alphtype.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1028. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1029. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o glam2mask glam2_glam2mask.o glam2_alignment.o glam2_fasta.o glam2_util.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1030. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mast.bin diagram.o logodds.o mast.o mast-util.o motifs.o pssm-distr.o regress.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1031. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o getsize getsize.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1032. libtool: link: (cd .libs/libmetameme.lax/libcommon.a && x86_64-pc-linux-gnu-ar x "/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/./.libs/libcommon.a")
1033. In file included from /usr/include/string.h:642:0,
1034. from macros.h:55,
1035. from ureadseq.h:16,
1036. from ureadseq.c:37:
1037. In function 'strcpy',
1038. inlined from 'writeSeq' at ureadseq.c:1765:13:
1039. /usr/include/bits/string3.h:105:3: warning: call to __builtin___strcpy_chk will always overflow destination buffer [enabled by default]
1040. mv -f .deps/mhmms-mhmms.Tpo .deps/mhmms-mhmms.Po
1041. libtool: link: (cd .libs/libmetameme.lax/liblogo.a && x86_64-pc-linux-gnu-ar x "/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/./.libs/liblogo.a")
1042. libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libmetameme.a .libs/libmetameme_la-ama_scan.o .libs/libmetameme_la-alignment.o .libs/libmetameme_la-alphabet.o .libs/libmetameme_la-array-list.o .libs/libmetameme_la-beadstring-xml.o .libs/libmetameme_la-binary-search.o .libs/libmetameme_la-build-hmm.o .libs/libmetameme_la-cisml.o .libs/libmetameme_la-clustalw-io.o .libs/libmetameme_la-dp.o .libs/libmetameme_la-evomodel.o .libs/libmetameme_la-evomodel_with_loss.o .libs/libmetameme_la-fasta-io.o .libs/libmetameme_la-fitevd.o .libs/libmetameme_la-gendb.o .libs/libmetameme_la-karlin.o .libs/libmetameme_la-linked-list.o .libs/libmetameme_la-log-hmm.o .libs/libmetameme_la-match.o .libs/libmetameme_la-merger.o .libs/libmetameme_la-metameme.o .libs/libmetameme_la-mhmm.o .libs/libmetameme_la-mhmms.o .libs/libmetameme_la-mhmm-state.o .libs/libmetameme_la-motiph-scoring.o .libs/libmetameme_la-object-list.o .libs/libmetameme_la-order.o .libs/libmetameme_la-params.o .libs/libmetameme_la-pssm.o .libs/libmetameme_la-qsort.o .libs/libmetameme_la-qvalue.o .libs/libmetameme_la-ranksum_test.o .libs/libmetameme_la-read-mhmm.o .libs/libmetameme_la-red-black-tree.o .libs/libmetameme_la-scored-sites.o .libs/libmetameme_la-seq.o .libs/libmetameme_la-simple-getopt.o .libs/libmetameme_la-string-list.o .libs/libmetameme_la-subst-matrix.o .libs/libmetameme_la-substmatrix-table.o .libs/libmetameme_la-tomtom.o .libs/libmetameme_la-tree.o .libs/libmetameme_la-utils.o .libs/libmetameme_la-write-mhmm.o .libs/libmetameme.lax/libcommon.a/libcommon_la-array.o .libs/libmetameme.lax/libcommon.a/libcommon_la-background.o .libs/libmetameme.lax/libcommon.a/libcommon_la-hash_alph.o .libs/libmetameme.lax/libcommon.a/libcommon_la-hash_table.o .libs/libmetameme.lax/libcommon.a/libcommon_la-heap.o .libs/libmetameme.lax/libcommon.a/libcommon_la-io.o .libs/libmetameme.lax/libcommon.a/libcommon_la-matrix.o .libs/libmetameme.lax/libcommon.a/libcommon_la-meme-io.o .libs/libmetameme.lax/libcommon.a/libcommon_la-motif.o .libs/libmetameme.lax/libcommon.a/libcommon_la-psp.o .libs/libmetameme.lax/libcommon.a/libcommon_la-rdb-matrix.o .libs/libmetameme.lax/libcommon.a/libcommon_la-read_csv.o .libs/libmetameme.lax/libcommon.a/libcommon_la-read_sequence.o .libs/libmetameme.lax/libcommon.a/libcommon_la-read_tamo.o .libs/libmetameme.lax/libcommon.a/libcommon_la-utils.o .libs/libmetameme.lax/libcommon.a/libcommon_la-xml-util.o .libs/libmetameme.lax/libcommon.a/libcommon_la-zscore.o .libs/libmetameme.lax/liblogo.a/liblogo_la-ceqlogo.o
1043. libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libmetameme.a
1044. mv -f .deps/ureadseq.Tpo .deps/ureadseq.Po
1045. libtool: link: rm -fr .libs/libmetameme.lax
1046. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme.bin meme_bin-alphabet.o meme_bin-array-list.o meme_bin-banner.o meme_bin-binary-search.o meme_bin-branching_search.o meme_bin-calculate_p_y.o meme_bin-discretize.o meme_bin-display.o meme_bin-dpalign.o meme_bin-em.o meme_bin-hash_table.o meme_bin-init.o meme_bin-justlike.o meme_bin-likelihood.o meme_bin-linked-list.o meme_bin-llr.o meme_bin-logodds.o meme_bin-logs.o meme_bin-mast-util.o meme_bin-meme.o meme_bin-meme-print-html.o meme_bin-meme_util.o meme_bin-merger.o meme_bin-message.o meme_bin-motifs.o meme_bin-mp.o meme_bin-oops.o meme_bin-partition.o meme_bin-prior.o meme_bin-pssm-distr.o meme_bin-read_seq_file.o meme_bin-red-black-tree.o meme_bin-regress.o meme_bin-seed.o meme_bin-seed_diffs.o meme_bin-seq2theta.o meme_bin-sp_matrix.o meme_bin-starts.o meme_bin-string-list.o meme_bin-subseq7.o meme_bin-tcm.o meme_bin-verbosity.o -Wl,--as-needed ./.libs/liblogo.a -L/usr/lib64 ./.libs/libcommon.a -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1047. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o readseq readseq.o ureadseq.o -lmpi -lm
1048. libtool: link: ( cd ".libs" && rm -f "libmetameme.la" && ln -s "../libmetameme.la" "libmetameme.la" )
1049. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o ama ama-ama.o libmetameme.la -lmpi -lm
1050. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o beadstring beadstring-beadstring.o libmetameme.la -lmpi -lm
1051. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DCL_MAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o ceqlogo ceqlogo-ceqlogo.o libmetameme.la liblogo.la -lmpi -lm
1052. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o clustalw-io clustalw_io-clustalw-io.o libmetameme.la -lmpi -lm
1053. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o clustalw2fasta clustalw2fasta-clustalw2fasta.o libmetameme.la -lmpi -lm
1054. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o clustalw2phylip clustalw2phylip-clustalw2phylip.o libmetameme.la -lmpi -lm
1055. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o draw-mhmm draw_mhmm-draw-mhmm.o libmetameme.la -lmpi -lm
1056. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o fasta-io fasta_io-fasta-io.o libmetameme.la -lmpi -lm
1057. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o fimo fimo-fimo.o libmetameme.la -lmpi -lm
1058. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o fitevd fitevd-fitevd.o libmetameme.la -lmpi -lm
1059. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o gendb gendb-gendb.o libmetameme.la -lmpi -lm
1060. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o gomo gomo-gomo.o libmetameme.la -lmpi -lm
1061. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o log-hmm log_hmm-log-hmm.o libmetameme.la -lmpi -lm
1062. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o meme-io meme_io-meme-io.o libmetameme.la -lxml2 -lz -lm -lmpi -lm
1063. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o mhmm mhmm-mhmm.o libmetameme.la -lmpi -lm
1064. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o mhmm-io mhmm_io-mhmm-io.o libmetameme.la -lmpi -lm
1065. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o mhmme mhmme.o libmetameme.la -lmpi -lm
1066. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o mhmms mhmms-mhmms.o libmetameme.la -lmpi -lm
1067. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o mhmmscan mhmmscan-mhmmscan.o libmetameme.la libcommon.la -lmpi -lm
1068. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o motiph motiph-motiph.o libmetameme.la -lmpi -lm
1069. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o pmp_bf pmp_bf-pmp_bf.o libmetameme.la -lmpi -lm
1070. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DSHADOW -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o shadow shadow-shadow.o libmetameme.la -lmpi -lm
1071. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o tomtom tomtom-tomtom.o libmetameme.la liblogo.la -lmpi -lm
1072. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o readseq readseq.o ureadseq.o -Wl,--as-needed /usr/lib64/libmpi.so -L/usr/lib64 /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1073. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o tree tree-tree.o libmetameme.la -lmpi -lm
1074. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o gomo gomo-gomo.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1075. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o log-hmm log_hmm-log-hmm.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1076. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o meme-io meme_io-meme-io.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lrt -lxml2 -lz /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1077. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o draw-mhmm draw_mhmm-draw-mhmm.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1078. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw2fasta clustalw2fasta-clustalw2fasta.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1079. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw2phylip clustalw2phylip-clustalw2phylip.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1080. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o gendb gendb-gendb.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1081. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o clustalw-io clustalw_io-clustalw-io.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1082. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o beadstring beadstring-beadstring.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1083. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ama ama-ama.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1084. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fasta-io fasta_io-fasta-io.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1085. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmm mhmm-mhmm.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1086. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fitevd fitevd-fitevd.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1087. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o fimo fimo-fimo.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1088. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmm-io mhmm_io-mhmm-io.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1089. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmms mhmms-mhmms.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1090. libtool: link: x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o motiph motiph-motiph.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1091. libtool: link: x86_64-pc-linux-gnu-gcc -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmme mhmme.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1092. libtool: link: x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o pmp_bf pmp_bf-pmp_bf.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1093. libtool: link: x86_64-pc-linux-gnu-gcc -DSHADOW -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o shadow shadow-shadow.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1094. libtool: link: x86_64-pc-linux-gnu-gcc -DCL_MAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ceqlogo ceqlogo-ceqlogo.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt ./.libs/liblogo.a /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1095. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o mhmmscan mhmmscan-mhmmscan.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 ./.libs/libcommon.a -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1096. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o qvalue qvalue-qvalue.o libmetameme.la -lm -lmpi -lm
1097. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o ranksum_test ranksum_test-ranksum_test.o libmetameme.la -lm -lmpi -lm
1098. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o libmetameme.la -lm -lmpi -lm
1099. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o reduce-alignment reduce_alignment-reduce-alignment.o libmetameme.la -lm -lmpi -lm
1100. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -Wl,--as-needed -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o libmetameme.la -lm -lmpi -lm
1101. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tomtom tomtom-tomtom.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt ./.libs/liblogo.a /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1102. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o tree tree-tree.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1103. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1104. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o qvalue qvalue-qvalue.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1105. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o ranksum_test ranksum_test-ranksum_test.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1106. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1107. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -DUNIX -D__USE_FIXED_PROTOTYPES__ -O -Wl,-O1 -o reduce-alignment reduce_alignment-reduce-alignment.o -Wl,--as-needed ./.libs/libmetameme.a -L/usr/lib64 -lxslt -lxml2 -lz -lrt /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -ldl -lnsl -lutil -lm -pthread
1108. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1109. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1110. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1111. Making all in scripts
1112. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1113. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' cat_max.txt > cat_max
1114. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' compare_dates.txt > compare_dates
1115. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' fasta-fetch.txt > fasta-fetch
1116. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' fasta-get-markov.txt > fasta-get-markov
1117. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' fasta-make-index.txt > fasta-make-index
1118. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' fasta-shuffle-letters.txt > fasta-shuffle-letters
1119. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' fasta-unique-names.txt > fasta-unique-names
1120. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' glam2html.py > glam2html
1121. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' glam2psfm.py > glam2psfm
1122. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' glam2scan2html.py > glam2scan2html
1123. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' get_db_csv.txt > get_db_csv
1124. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' jaspar2meme.pl > jaspar2meme
1125. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' hart2meme-bkg.pl > hart2meme-bkg
1126. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' hartemink2psp.pl > hartemink2psp
1127. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' iupac2meme.pl > iupac2meme
1128. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' make_logodds.txt > make_logodds
1129. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' mast.txt > mast
1130. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' mast2html.pl > mast2html
1131. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' meme.txt > meme
1132. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' mcast.pl > mcast
1133. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' memehtml2text.pl > memehtml2text
1134. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' mhmm2html.pl > mhmm2html
1135. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' motif2meme.pm.in > motif2meme.pm
1136. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' priority2meme.pl > priority2meme
1137. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' scpd2meme.pl > scpd2meme
1138. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' tamo2meme.pl > tamo2meme
1139. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' transfac2meme.txt > transfac2meme
1140. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' uniprobe2meme.pl > uniprobe2meme
1141. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' update_db.txt > update_db
1142. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' convert2html.txt > convert2html.pl
1143. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1144. Making all in tests
1145. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1146. Making all in common
1147. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common'
1148. make[3]: Nothing to be done for `all'.
1149. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common'
1150. Making all in clustalw2fasta
1151. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta'
1152. make[3]: Nothing to be done for `all'.
1153. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta'
1154. Making all in draw-mhmm
1155. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm'
1156. make[3]: Nothing to be done for `all'.
1157. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm'
1158. Making all in mast
1159. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast'
1160. make[3]: Nothing to be done for `all'.
1161. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast'
1162. Making all in meme
1163. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme'
1164. make[3]: Nothing to be done for `all'.
1165. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme'
1166. Making all in mhmm
1167. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm'
1168. make[3]: Nothing to be done for `all'.
1169. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm'
1170. Making all in mhmms
1171. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms'
1172. make[3]: Nothing to be done for `all'.
1173. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms'
1174. Making all in motiph
1175. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph'
1176. make[3]: Nothing to be done for `all'.
1177. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph'
1178. Making all in scaffold
1179. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold'
1180. make[3]: Nothing to be done for `all'.
1181. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold'
1182. Making all in tomtom
1183. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom'
1184. make[3]: Nothing to be done for `all'.
1185. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom'
1186. Making all in gomo
1187. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo'
1188. make[3]: Nothing to be done for `all'.
1189. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo'
1190. Making all in qvalue
1191. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue'
1192. make[3]: Nothing to be done for `all'.
1193. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue'
1194. Making all in web
1195. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web'
1196. make[3]: Nothing to be done for `all'.
1197. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web'
1198. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1199. make[3]: Nothing to be done for `all-am'.
1200. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1201. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1202. Making all in website
1203. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1204. Making all in scripts
1205. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts'
1206. sed -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' changetoweb.txt > changetoweb
1207. sed -e 's%use lib qw(.)%use lib qw(/opt/meme/lib64/perl)%' \
1208. -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' metameme.txt > metameme
1209. sed -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' oldmeme2meme.txt > oldmeme2meme
1210. /bin/sed -e 's%@SITE_CONTACT@%@localhost%' -e 's%@METAMEME_SITE_CONTACT@%%' -e 's%@BIN_DIR@%/opt/meme/bin%' -e 's%@MODULE_DIR@%/opt/meme/lib64/perl%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@METAMEMEDIR@%/opt/meme%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@WEB_DIR@%/opt/meme/web%' -e 's%@METAMEME_WEB_DIR@%%' -e 's%@MAX_TIME@%7200%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@METAMEME_SITE_URL@%%' Globals.txt > Globals.pm
1211. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts'
1212. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1213. make[3]: Nothing to be done for `all-am'.
1214. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1215. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1216. Making all in doc
1217. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1218. Making all in examples
1219. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1220. Making all in fimo_example_output_files
1221. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files'
1222. make[4]: Nothing to be done for `all'.
1223. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files'
1224. Making all in glam2_example_output_files
1225. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files'
1226. make[4]: Nothing to be done for `all'.
1227. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files'
1228. Making all in glam2scan_example_output_files
1229. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files'
1230. make[4]: Nothing to be done for `all'.
1231. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files'
1232. Making all in meme_example_output_files
1233. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files'
1234. make[4]: Nothing to be done for `all'.
1235. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files'
1236. Making all in mast_example_output_files
1237. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files'
1238. make[4]: Nothing to be done for `all'.
1239. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files'
1240. Making all in tomtom_example_output_files
1241. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files'
1242. make[4]: Nothing to be done for `all'.
1243. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files'
1244. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1245. make[4]: Nothing to be done for `all-am'.
1246. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1247. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1248. Making all in images
1249. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images'
1250. make[3]: Nothing to be done for `all'.
1251. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images'
1252. Making all in .
1253. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1254. ../src/xsltproc_lite ./options.xsl alphtype.xml alphtype.html
1255. ../src/xsltproc_lite ./options.xsl ama.xml ama.html
1256. ../src/xsltproc_lite ./options.xsl beadstring.xml beadstring.html
1257. ../src/xsltproc_lite ./options.xsl ceqlogo.xml ceqlogo.html
1258. ../src/xsltproc_lite ./options.xsl clustalw2phylip.xml clustalw2phylip.html
1259. ../src/xsltproc_lite ./options.xsl draw-mhmm.xml draw-mhmm.html
1260. ../src/xsltproc_lite ./options.xsl fasta-get-markov.xml fasta-get-markov.html
1261. ../src/xsltproc_lite ./options.xsl fasta-io.xml fasta-io.html
1262. ../src/xsltproc_lite ./options.xsl fimo.xml fimo.html
1263. ../src/xsltproc_lite ./options.xsl fitevd.xml fitevd.html
1264. ../src/xsltproc_lite ./options.xsl gendb.xml gendb.html
1265. ../src/xsltproc_lite ./options.xsl getsize.xml getsize.html
1266. ../src/xsltproc_lite ./options.xsl gomo.xml gomo.html
1267. ../src/xsltproc_lite ./options.xsl log-hmm.xml log-hmm.html
1268. ../src/xsltproc_lite ./options.xsl meme-io.xml meme-io.html
1269. ../src/xsltproc_lite ./options.xsl mhmm.xml mhmm.html
1270. ../src/xsltproc_lite ./options.xsl mhmme.xml mhmme.html
1271. ../src/xsltproc_lite ./options.xsl mhmms.xml mhmms.html
1272. ../src/xsltproc_lite ./options.xsl miao.xml miao.html
1273. /bin/sed -e 's%\@VERSION\@%4.3.0%g' -e 's%\@CONTACT\@%@localhost%g' -e 's%\@METAMEME_CONTACT\@%%g' -e 's%\@URL\@%http://localhost/meme%g' modified-template-footer.in > modified-template-footer.js
1274. ../src/xsltproc_lite ./options.xsl motiph.xml motiph.html
1275. ../src/xsltproc_lite ./options.xsl pmp_bf.xml pmp_bf.html
1276. ../src/xsltproc_lite ./options.xsl qvalue.xml qvalue.html
1277. ../src/xsltproc_lite ./options.xsl readseq.xml readseq.html
1278. ../src/xsltproc_lite ./options.xsl reconcile-tree-alignment.xml reconcile-tree-alignment.html
1279. ../src/xsltproc_lite ./options.xsl reduce-alignment.xml reduce-alignment.html
1280. ../src/xsltproc_lite ./options.xsl remove-alignment-gaps.xml remove-alignment-gaps.html
1281. ../src/xsltproc_lite ./options.xsl shadow.xml shadow.html
1282. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1283. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1284. Making all in etc
1285. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc'
1286. /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' fimo.sh.in > fimo.sh
1287. /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' glam2.sh.in > glam2.sh
1288. /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' glam2scan.sh.in > glam2scan.sh
1289. /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' gomo.sh.in > gomo.sh
1290. /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' mast.sh.in > mast.sh
1291. /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@BINARYDIR@%/opt/meme/bin%' -e 's%@APPCONFIGDIR@%/opt/meme/etc%' meme-mast.sh.in > meme-mast.sh
1292. /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/fimo.sh%' fimo_config.xml.in > fimo_config.xml
1293. /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/glam2.sh%' glam2_config.xml.in > glam2_config.xml
1294. /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/glam2scan.sh%' glam2scan_config.xml.in > glam2scan_config.xml
1295. /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/gomo.sh%' gomo_config.xml.in > gomo_config.xml
1296. /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@METAMEME_URL@%http://localhost/meme%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/%' gomo.xsl.in > gomo.xsl
1297. /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/mast.sh%' mast_config.xml.in > mast_config.xml
1298. echo '#<db_root>,<prot?>,<nuc?>,<short_seqs?>,<db_menu_name>,<db_long_name>,<protein_url>,<nuc_url>' > mast_db_names.csv
1299. /bin/sed -e 's%@BINARYLOCATION@%/opt/meme/etc/meme-mast.sh%' meme_config.xml.in > meme_config.xml
1300. /bin/sed -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@METAMEME_URL@%http://localhost/meme%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/%' meme.xsl.in > meme.xsl
1301. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc'
1302. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
1303. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
1304. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
1305. >>> Source compiled.
1306. make -j24 -j1 test
1307. cd scripts; make check
1308. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1309. make check-TESTS
1310. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1311. /bin/sed -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@PERLMODDIR@%/opt/meme/lib64/perl%' -e 's%@PERLLIBDIR@%/opt/meme/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%@localhost%@localhost%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/opt/meme%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@BINDIR@%/opt/meme/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/opt/meme/db%' -e 's%@HOST_NAME@%localhost%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@SITE_URL@%http://localhost/meme%' -e 's%@DOCDIR@%%' metatest.pl > metatest
1312. chmod ugo+x metatest
1314. Meme test for
1315. ---------------------------------
1316. Dataset Model result
1317. ---------------------------------
1318. crp0 oops OK
1319. crp0 zoops OK
1320. crp0 tcm OK
1321. psp_test zoops_psp OK
1323. Mast test for
1324. ---------------------------------
1325. Dataset Model result
1326. ---------------------------------
1327. crp0 oops OK
1328. crp0 zoops OK
1329. crp0 tcm OK
1331. PASS: runcheck
1332. testdir = ../tests
1333. ************************************************************
1334. Testing mhmms . . .
1335. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/mhmms --maxseqs 3 --quiet mhmm/crp0.linear.mhmm common/crp0.fasta
1336. Too few (18 < 200) scores to estimate E-values.
1337. Warning: Unable to compute E-values. Sorting by score instead.
1338. SUCCESS
1339. ************************************************************
1340. Testing mhmms . . .
1341. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/mhmms --global --quiet mhmm/lipo.linear.mhmm common/lipo.fasta
1342. Too few (5 < 200) scores to estimate E-values.
1343. Warning: Unable to compute E-values. Sorting by score instead.
1344. SUCCESS
1345. ************************************************************
1346. Testing mhmms . . .
1347. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/mhmms --quiet --motif-scoring mhmm/lipo.linear.mhmm mhmms/r1635.fasta
1348. Too few (0 < 200) scores to estimate E-values.
1349. Warning: Unable to compute E-values. Sorting by score instead.
1350. SUCCESS
1351. ************************************************************
1352. Testing mhmms . . .
1353. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/mhmms --motif-scoring --quiet mhmms/r1584.hmm mhmms/r1584.fasta
1354. Too few (4 < 200) scores to estimate E-values.
1355. Warning: Unable to compute E-values. Sorting by score instead.
1356. SUCCESS
1357. ************************************************************
1358. Testing motiph . . .
1359. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/motiph --bg 2.0 --pseudocount 0.01 --text motiph/spiked.aln motiph/yeast.tree motiph/MCM1.meme.html
1360. Using nucleotide alphabet (ACGTRYKMSWBDHVN).
1361. Using background frequencies from NR sequence database.
1362. Reading motif 1.
1363. Reverse complementing: +1 -1
1364. Using motif +1 of width 13.
1365. Read alignment from motiph/spiked.aln.
1366. Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
1367. Computing q-values (879 recorded p-values, 879 total p-values).
1368. Estimated pi_0=0.779845
1369. Using motif -1 of width 13.
1370. Read alignment from motiph/spiked.aln.
1371. Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
1372. Computing q-values (879 recorded p-values, 879 total p-values).
1373. Estimated pi_0=0.815508
1374. Total number of positions scored: 1758
1375. SUCCESS
1376. ************************************************************
1377. Testing motiph . . .
1378. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/motiph --bg 2.0 --pseudocount 0.01 --text --output-pthresh 1.0 --motif 2 --motif 3 motiph/spiked.aln motiph/yeast.tree common/crp0.meme.html
1379. error : connection refused
1380. Using nucleotide alphabet (ACGTRYKMSWBDHVN).
1381. Using background frequencies from NR sequence database.
1382. Reading motif 1 2 3.
1383. Reverse complementing: +3 -3 +2 -2 +1 -1
1384. Using motif +2 of width 8.
1385. Read alignment from motiph/spiked.aln.
1386. Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
1387. Computing q-values (1243 recorded p-values, 1243 total p-values).
1388. Estimated pi_0=1
1389. Using motif -2 of width 8.
1390. Read alignment from motiph/spiked.aln.
1391. Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
1392. Computing q-values (1243 recorded p-values, 1243 total p-values).
1393. Estimated pi_0=1
1394. Using motif +3 of width 11.
1395. Read alignment from motiph/spiked.aln.
1396. Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
1397. Computing q-values (1014 recorded p-values, 1014 total p-values).
1398. Estimated pi_0=1
1399. Using motif -3 of width 11.
1400. Read alignment from motiph/spiked.aln.
1401. Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
1402. Computing q-values (1014 recorded p-values, 1014 total p-values).
1403. Estimated pi_0=1
1404. Total number of positions scored: 4514
1405. SUCCESS
1406. ************************************************************
1407. Testing fimo . . .
1408. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/fimo --text --motif-pseudo 0.01 motiph/MCM1.meme.html motiph/spiked.fasta
1409. Warning: text mode turns off computation of q-values
1410. Using nucleotide alphabet (ACGTRYKMSWBDHVN).
1411. Using background frequencies from NR sequence database.
1412. Reading motif 1.
1413. Reverse complementing: +1 -1
1414. Using motif +1 of width 13.
1415. Using motif -1 of width 13.
1416. SUCCESS
1417. ************************************************************
1418. Testing fimo . . .
1419. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/fimo --text --motif 2 --motif 3 --output-pthresh 0.01 common/crp0.meme.html motiph/spiked.fasta
1420. Warning: text mode turns off computation of q-values
1421. error : connection refused
1422. Using nucleotide alphabet (ACGTRYKMSWBDHVN).
1423. Using background frequencies from NR sequence database.
1424. Reading motif 1 2 3.
1425. Reverse complementing: +3 -3 +2 -2 +1 -1
1426. Skipping motif +1.
1427. Skipping motif -1.
1428. Using motif +2 of width 8.
1429. Using motif -2 of width 8.
1430. Using motif +3 of width 11.
1431. Using motif -3 of width 11.
1432. SUCCESS
1433. ************************************************************
1434. Testing ama . . .
1435. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/ama --pvalues --verbosity 1 gomo/motif.meme gomo/seqs.fasta gomo/seqs.norc.bg
1436. SUCCESS
1437. ************************************************************
1438. Testing ama . . .
1439. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/ama --verbosity 1 --scoring max-odds gomo/motif.meme gomo/seqs.fasta gomo/seqs.bg
1440. SUCCESS
1441. ************************************************************
1442. Testing gomo . . .
1443. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/gomo --nostatus --verbosity 1 --text gomo/GO2Gene.map.csv gomo/ama.nozscoring.xml
1444. Warning: Cannot estimate pi_zero accurately from fewer than 100 p-values.
1445. Using pi_zero = 1.0.
1446. Warning: Cannot estimate pi_zero accurately from fewer than 100 p-values.
1447. Using pi_zero = 1.0.
1448. Warning: Cannot estimate pi_zero accurately from fewer than 100 p-values.
1449. Using pi_zero = 1.0.
1450. SUCCESS
1451. ************************************************************
1452. Testing gomo . . .
1453. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/gomo --nostatus --verbosity 1 --text gomo/GO2Gene.map.csv gomo/ama.nozscoring.xml gomo/ama.nozscoring.xml
1454. Warning: Cannot estimate pi_zero accurately from fewer than 100 p-values.
1455. Using pi_zero = 1.0.
1456. Warning: Cannot estimate pi_zero accurately from fewer than 100 p-values.
1457. Using pi_zero = 1.0.
1458. Warning: Cannot estimate pi_zero accurately from fewer than 100 p-values.
1459. Using pi_zero = 1.0.
1460. SUCCESS
1461. ************************************************************
1462. Testing shadow . . .
1463. /tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts/../src/shadow --output-pthresh 0.1 --bg 2.0 --text motiph/spiked.aln motiph/yeast.tree
1464. Using nucleotide alphabet (ACGTRYKMSWBDHVN).
1465. Read alignment from motiph/spiked.aln.
1466. Computing background frequencies from alignment.
1467. Background frequencies: 0.328 0.171 0.168 0.333
1468. Read background frequencies from alignment.
1469. Computing q-values (1927 recorded p-values, 1927 total p-values).
1470. Estimated pi_0=0.521779
1471. SUCCESS
1472. PASS: metatest
1473. ==================
1474. All 2 tests passed
1475. ==================
1476. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1477. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1479. >>> Install meme-4.3.0 into /tmp/portage/sci-biology/meme-4.3.0/image/ category sci-biology
1480. make -j24 install DESTDIR=/tmp/portage/sci-biology/meme-4.3.0/image/
1481. Making install in src
1482. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1483. make install-recursive
1484. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1485. Making install in filters
1486. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
1487. Making install in purge
1488. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge'
1489. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge'
1490. make[5]: Nothing to be done for `install-data-am'.
1491. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1492. /bin/sh ../../../libtool --mode=install /usr/bin/install -c purge '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1493. libtool: install: /usr/bin/install -c purge /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/purge
1494. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge'
1495. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/purge'
1496. Making install in dust
1497. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust'
1498. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust'
1499. make[5]: Nothing to be done for `install-data-am'.
1500. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1501. /bin/sh ../../../libtool --mode=install /usr/bin/install -c dust '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1502. libtool: install: /usr/bin/install -c dust /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/dust
1503. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust'
1504. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters/dust'
1505. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
1506. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
1507. make[5]: Nothing to be done for `install-exec-am'.
1508. make[5]: Nothing to be done for `install-data-am'.
1509. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
1510. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
1511. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/filters'
1512. Making install in libxml2
1513. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
1514. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
1515. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
1516. make[5]: Nothing to be done for `install-exec-am'.
1517. make[5]: Nothing to be done for `install-data-am'.
1518. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
1519. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
1520. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxml2'
1521. Making install in libxslt
1522. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt'
1523. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt'
1524. make[4]: Nothing to be done for `install-exec-am'.
1525. make[4]: Nothing to be done for `install-data-am'.
1526. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt'
1527. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src/libxslt'
1528. Making install in .
1529. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1530. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1531. make[4]: Nothing to be done for `install-data-am'.
1532. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1533. /bin/sh ../libtool --mode=install /usr/bin/install -c alphtype ama beadstring ceqlogo clustalw-io clustalw2fasta clustalw2phylip draw-mhmm fasta-io fimo fitevd gendb getsize glam2 glam2format glam2mask glam2scan gomo log-hmm mast.bin meme.bin meme-io meme-xml-html mhmm mhmm-io mhmme mhmms mhmmscan motiph pmp_bf readseq shadow tomtom tree qvalue ranksum_test reconcile-tree-alignment reduce-alignment remove-alignment-gaps xsltproc_lite '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1534. libtool: install: /usr/bin/install -c alphtype /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/alphtype
1535. libtool: install: /usr/bin/install -c ama /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ama
1536. libtool: install: /usr/bin/install -c beadstring /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/beadstring
1537. libtool: install: /usr/bin/install -c ceqlogo /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ceqlogo
1538. libtool: install: /usr/bin/install -c clustalw-io /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw-io
1539. libtool: install: /usr/bin/install -c clustalw2fasta /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2fasta
1540. libtool: install: /usr/bin/install -c clustalw2phylip /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/clustalw2phylip
1541. libtool: install: /usr/bin/install -c draw-mhmm /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/draw-mhmm
1542. libtool: install: /usr/bin/install -c fasta-io /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fasta-io
1543. libtool: install: /usr/bin/install -c fimo /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fimo
1544. libtool: install: /usr/bin/install -c fitevd /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/fitevd
1545. libtool: install: /usr/bin/install -c gendb /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gendb
1546. libtool: install: /usr/bin/install -c getsize /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/getsize
1547. libtool: install: /usr/bin/install -c glam2 /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2
1548. libtool: install: /usr/bin/install -c glam2format /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2format
1549. libtool: install: /usr/bin/install -c glam2mask /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2mask
1550. libtool: install: /usr/bin/install -c glam2scan /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/glam2scan
1551. libtool: install: /usr/bin/install -c gomo /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/gomo
1552. libtool: install: /usr/bin/install -c log-hmm /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/log-hmm
1553. libtool: install: /usr/bin/install -c mast.bin /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mast.bin
1554. libtool: install: /usr/bin/install -c meme.bin /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme.bin
1555. libtool: install: /usr/bin/install -c meme-io /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-io
1556. libtool: install: /usr/bin/install -c meme-xml-html /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/meme-xml-html
1557. libtool: install: /usr/bin/install -c mhmm /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm
1558. libtool: install: /usr/bin/install -c mhmm-io /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmm-io
1559. libtool: install: /usr/bin/install -c mhmme /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmme
1560. libtool: install: /usr/bin/install -c mhmms /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmms
1561. libtool: install: /usr/bin/install -c mhmmscan /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/mhmmscan
1562. libtool: install: /usr/bin/install -c motiph /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/motiph
1563. libtool: install: /usr/bin/install -c pmp_bf /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/pmp_bf
1564. libtool: install: /usr/bin/install -c readseq /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/readseq
1565. libtool: install: /usr/bin/install -c shadow /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/shadow
1566. libtool: install: /usr/bin/install -c tomtom /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tomtom
1567. libtool: install: /usr/bin/install -c tree /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/tree
1568. libtool: install: /usr/bin/install -c qvalue /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/qvalue
1569. libtool: install: /usr/bin/install -c ranksum_test /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/ranksum_test
1570. libtool: install: /usr/bin/install -c reconcile-tree-alignment /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reconcile-tree-alignment
1571. libtool: install: /usr/bin/install -c reduce-alignment /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/reduce-alignment
1572. libtool: install: /usr/bin/install -c remove-alignment-gaps /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/remove-alignment-gaps
1573. libtool: install: /usr/bin/install -c xsltproc_lite /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin/xsltproc_lite
1574. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1575. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1576. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1577. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/src'
1578. Making install in scripts
1579. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1580. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1581. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1582. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib64/perl'
1583. /usr/bin/install -c cat_max compare_dates download fasta-fetch fasta-get-markov fasta-make-index fasta-shuffle-letters fasta-unique-names glam2html glam2psfm glam2scan2html get_db_csv jaspar2meme hart2meme-bkg hartemink2psp iupac2meme make_logodds mast mast2html meme mcast memehtml2text mhmm2html motif2meme.pm plotgen priority2meme sd scpd2meme tamo2meme transfac2meme uniprobe2meme update_db update_meme_tests '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1584. /usr/bin/install -c convert2html.pl '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib64/perl'
1585. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1586. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/scripts'
1587. Making install in tests
1588. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1589. Making install in common
1590. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common'
1591. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common'
1592. make[3]: Nothing to be done for `install-exec-am'.
1593. make[3]: Nothing to be done for `install-data-am'.
1594. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common'
1595. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/common'
1596. Making install in clustalw2fasta
1597. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta'
1598. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta'
1599. make[3]: Nothing to be done for `install-exec-am'.
1600. make[3]: Nothing to be done for `install-data-am'.
1601. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta'
1602. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/clustalw2fasta'
1603. Making install in draw-mhmm
1604. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm'
1605. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm'
1606. make[3]: Nothing to be done for `install-exec-am'.
1607. make[3]: Nothing to be done for `install-data-am'.
1608. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm'
1609. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/draw-mhmm'
1610. Making install in mast
1611. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast'
1612. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast'
1613. make[3]: Nothing to be done for `install-exec-am'.
1614. make[3]: Nothing to be done for `install-data-am'.
1615. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast'
1616. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mast'
1617. Making install in meme
1618. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme'
1619. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme'
1620. make[3]: Nothing to be done for `install-exec-am'.
1621. make[3]: Nothing to be done for `install-data-am'.
1622. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme'
1623. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/meme'
1624. Making install in mhmm
1625. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm'
1626. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm'
1627. make[3]: Nothing to be done for `install-exec-am'.
1628. make[3]: Nothing to be done for `install-data-am'.
1629. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm'
1630. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmm'
1631. Making install in mhmms
1632. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms'
1633. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms'
1634. make[3]: Nothing to be done for `install-exec-am'.
1635. make[3]: Nothing to be done for `install-data-am'.
1636. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms'
1637. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/mhmms'
1638. Making install in motiph
1639. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph'
1640. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph'
1641. make[3]: Nothing to be done for `install-exec-am'.
1642. make[3]: Nothing to be done for `install-data-am'.
1643. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph'
1644. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/motiph'
1645. Making install in scaffold
1646. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold'
1647. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold'
1648. make[3]: Nothing to be done for `install-exec-am'.
1649. make[3]: Nothing to be done for `install-data-am'.
1650. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold'
1651. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/scaffold'
1652. Making install in tomtom
1653. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom'
1654. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom'
1655. make[3]: Nothing to be done for `install-exec-am'.
1656. make[3]: Nothing to be done for `install-data-am'.
1657. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom'
1658. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/tomtom'
1659. Making install in gomo
1660. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo'
1661. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo'
1662. make[3]: Nothing to be done for `install-exec-am'.
1663. make[3]: Nothing to be done for `install-data-am'.
1664. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo'
1665. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/gomo'
1666. Making install in qvalue
1667. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue'
1668. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue'
1669. make[3]: Nothing to be done for `install-exec-am'.
1670. make[3]: Nothing to be done for `install-data-am'.
1671. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue'
1672. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/qvalue'
1673. Making install in web
1674. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web'
1675. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web'
1676. make[3]: Nothing to be done for `install-exec-am'.
1677. make[3]: Nothing to be done for `install-data-am'.
1678. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web'
1679. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests/web'
1680. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1681. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1682. make[3]: Nothing to be done for `install-exec-am'.
1683. make[3]: Nothing to be done for `install-data-am'.
1684. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1685. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1686. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/tests'
1687. Making install in website
1688. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1689. Making install in scripts
1690. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts'
1691. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts'
1692. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1693. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib64/perl'
1694. /usr/bin/install -c changetoweb metameme oldmeme2meme '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/bin'
1695. /usr/bin/install -c Globals.pm '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/lib64/perl'
1696. make install-exec-hook
1697. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts'
1698. make[4]: Nothing to be done for `install-exec-hook'.
1699. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts'
1700. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts'
1701. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website/scripts'
1702. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1703. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1704. make[3]: Nothing to be done for `install-exec-am'.
1705. make[3]: Nothing to be done for `install-data-am'.
1706. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1707. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1708. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/website'
1709. Making install in doc
1710. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1711. Making install in examples
1712. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1713. Making install in fimo_example_output_files
1714. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files'
1715. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files'
1716. make[4]: Nothing to be done for `install-exec-am'.
1717. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files'
1718. /usr/bin/install -c -m 644 fimo.gff fimo.html fimo.txt fimo.xml cisml.css fimo-to-html.xsl '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/fimo_example_output_files'
1719. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files'
1720. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/fimo_example_output_files'
1721. Making install in glam2_example_output_files
1722. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files'
1723. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files'
1724. make[4]: Nothing to be done for `install-exec-am'.
1725. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files'
1726. /usr/bin/install -c -m 644 glam2.html logo1.png logo_ssc1.png logo2.png logo_ssc2.png logo3.png logo_ssc3.png logo4.png logo_ssc4.png logo5.png logo_ssc5.png logo6.png logo_ssc6.png logo7.png logo_ssc7.png logo8.png logo_ssc8.png logo9.png logo_ssc9.png '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2_example_output_files'
1727. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files'
1728. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2_example_output_files'
1729. Making install in glam2scan_example_output_files
1730. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files'
1731. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files'
1732. make[4]: Nothing to be done for `install-exec-am'.
1733. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2scan_example_output_files'
1734. /usr/bin/install -c -m 644 glam2scan.html '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/glam2scan_example_output_files'
1735. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files'
1736. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/glam2scan_example_output_files'
1737. Making install in meme_example_output_files
1738. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files'
1739. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files'
1740. make[4]: Nothing to be done for `install-exec-am'.
1741. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files'
1742. /usr/bin/install -c -m 644 meme.xml meme.xsl meme.html meme.txt logo1.png logo2.png logo3.png logo1.eps logo2.eps logo3.eps logo_ssc1.png logo_ssc2.png logo_ssc3.png logo_ssc1.eps logo_ssc2.eps logo_ssc3.eps '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/meme_example_output_files'
1743. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files'
1744. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/meme_example_output_files'
1745. Making install in mast_example_output_files
1746. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files'
1747. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files'
1748. make[4]: Nothing to be done for `install-exec-am'.
1749. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/mast_example_output_files'
1750. /usr/bin/install -c -m 644 mast.html '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/mast_example_output_files'
1751. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files'
1752. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/mast_example_output_files'
1753. Making install in tomtom_example_output_files
1754. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files'
1755. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files'
1756. make[4]: Nothing to be done for `install-exec-am'.
1757. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files'
1758. /usr/bin/install -c -m 644 logo_1_+1.eps logo_1_+1.png logo_2_+2.eps logo_2_+2.png logo_3_+3.eps logo_3_+3.png tomtom.html '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples/tomtom_example_output_files'
1759. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files'
1760. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples/tomtom_example_output_files'
1761. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1762. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1763. make[4]: Nothing to be done for `install-exec-am'.
1764. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples'
1765. /usr/bin/install -c -m 644 At.fa sample-kabat.seq sample-glam2-aln.dna sample-glam2-aln.protein sample-motif.dna sample-dna-motif.meme-io sample-protein-motif.meme-io '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/examples'
1766. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1767. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1768. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/examples'
1769. Making install in images
1770. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images'
1771. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images'
1772. make[3]: Nothing to be done for `install-exec-am'.
1773. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images'
1774. /usr/bin/install -c -m 644 cbrc_logo.png fimo_logo.png glam2_logo.png glam2scan_logo.png nbcr_logo_trans.gif ncrr_logo.gif schematic.fig schematic.png sdsc_logo.png tomtom_logo.png uq_logo.png ucsd_logo.png UWlogo150p.gif webserver_schema.png '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc/images'
1775. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images'
1776. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc/images'
1777. Making install in .
1778. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1779. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1780. make[3]: Nothing to be done for `install-exec-am'.
1781. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc'
1782. /usr/bin/install -c -m 644 alphabets.html authors.html bfile-format.html cite.html clustalw2fasta.html clustalw-format.html copyright.html fasta-format.html glam2.css glam2format_man.html glam2mask_man.html glam2scan_man.html glam2_alphabet.html glam2_dirichlet.html glam2_install.html glam2_man.html glam2-template-header.js GLAM2_method.pdf glam2_ref.html glam2_tut.html install.html lipo.fasta lipo.linear.all.mhmms lipo.linear.mhmm lipo.meme.html lipo.meme.stripped.txt mast.html mcast.html meme.dtd meme.html meme-format.html meme-install.html meme-suite-logo.js meme-suite.css metameme.css meta-meme.gif mhmm-output.html mhmmscan.html overview.html purge.html '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc'
1783. /usr/bin/install -c -m 644 release-notes.html transfac2meme.html sdsc.gif select-star-species.html standards.html tomtom.html transfac-format.html alphtype.html ama.html beadstring.html ceqlogo.html clustalw2phylip.html draw-mhmm.html fasta-get-markov.html fasta-io.html fimo.html fitevd.html gendb.html getsize.html gomo.html log-hmm.html meme-io.html mhmm.html mhmme.html mhmms.html miao.html modified-template-footer.js motiph.html pmp_bf.html qvalue.html readseq.html reconcile-tree-alignment.html reduce-alignment.html remove-alignment-gaps.html shadow.html '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/doc'
1784. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1785. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1786. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/doc'
1787. Making install in etc
1788. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc'
1789. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc'
1790. make[2]: Nothing to be done for `install-exec-am'.
1791. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc'
1792. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc'
1793. /usr/bin/install -c -m 644 beadstring.xsl bkg.jpg cisml.css fimo.xsl hmm-text.xsl mast.doc mast_upstream_db.list meme.doc gomo_db.csv prior1.plib prior30.plib template.eps template.svg tomtom_db_names.csv cisml-to-gff.xsl cisml-to-html.xsl cisml-to-text.xsl fimo-to-gff.xsl fimo-to-html.xsl fimo-to-text.xsl fimo_config.xml glam2_config.xml glam2scan_config.xml gomo_config.xml gomo.xsl mast_config.xml mast_db_names.csv meme_config.xml meme.xsl '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc'
1794. /usr/bin/install -c fimo.sh glam2.sh glam2scan.sh gomo.sh mast.sh meme-mast.sh '/tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/etc'
1795. make install-data-hook
1796. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc'
1797. make[3]: Nothing to be done for `install-data-hook'.
1798. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc'
1799. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc'
1800. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0/etc'
1801. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
1802. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
1803. make[2]: Nothing to be done for `install-exec-am'.
1804. mkdir -p /tmp/portage/sci-biology/meme-4.3.0/image//var/log/meme
1805. chmod a+w /tmp/portage/sci-biology/meme-4.3.0/image//var/log/meme
1806. make install-data-hook
1807. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
1808. mkdir -p /tmp/portage/sci-biology/meme-4.3.0/image//opt/meme/db
1809. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
1810. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
1811. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.3.0/work/meme_4.3.0'
1812. >>> Completed installing meme-4.3.0 into /tmp/portage/sci-biology/meme-4.3.0/image/
1815. * QA Notice: Files built without respecting CFLAGS have been detected
1816. * Please include the following list of files in your report:
1817. * /opt/meme/bin/xsltproc_lite
1818. * /opt/meme/bin/remove-alignment-gaps
1819. * /opt/meme/bin/reduce-alignment
1820. * /opt/meme/bin/reconcile-tree-alignment
1821. * /opt/meme/bin/ranksum_test
1822. * /opt/meme/bin/qvalue
1823. * /opt/meme/bin/tree
1824. * /opt/meme/bin/tomtom
1825. * /opt/meme/bin/shadow
1826. * /opt/meme/bin/readseq
1827. * /opt/meme/bin/pmp_bf
1828. * /opt/meme/bin/motiph
1829. * /opt/meme/bin/mhmmscan
1830. * /opt/meme/bin/mhmms
1831. * /opt/meme/bin/mhmme
1832. * /opt/meme/bin/mhmm-io
1833. * /opt/meme/bin/mhmm
1834. * /opt/meme/bin/meme-xml-html
1835. * /opt/meme/bin/meme-io
1836. * /opt/meme/bin/meme.bin
1837. * /opt/meme/bin/mast.bin
1838. * /opt/meme/bin/log-hmm
1839. * /opt/meme/bin/gomo
1840. * /opt/meme/bin/glam2scan
1841. * /opt/meme/bin/glam2mask
1842. * /opt/meme/bin/glam2format
1843. * /opt/meme/bin/glam2
1844. * /opt/meme/bin/getsize
1845. * /opt/meme/bin/gendb
1846. * /opt/meme/bin/fitevd
1847. * /opt/meme/bin/fimo
1848. * /opt/meme/bin/fasta-io
1849. * /opt/meme/bin/draw-mhmm
1850. * /opt/meme/bin/clustalw2phylip
1851. * /opt/meme/bin/clustalw2fasta
1852. * /opt/meme/bin/clustalw-io
1853. * /opt/meme/bin/ceqlogo
1854. * /opt/meme/bin/beadstring
1855. * /opt/meme/bin/ama
1856. * /opt/meme/bin/alphtype
1857. * /opt/meme/bin/dust
1858. * /opt/meme/bin/purge
1860. strip: x86_64-pc-linux-gnu-strip --strip-unneeded -R .comment -R .GCC.command.line
1861. opt/meme/bin/alphtype
1862. opt/meme/bin/ceqlogo
1863. opt/meme/bin/clustalw2phylip
1864. opt/meme/bin/getsize
1865. opt/meme/bin/fimo
1866. opt/meme/bin/glam2mask
1867. opt/meme/bin/log-hmm
1868. opt/meme/bin/meme-io
1869. opt/meme/bin/meme-xml-html
1870. opt/meme/bin/mhmme
1871. opt/meme/bin/motiph
1872. opt/meme/bin/pmp_bf
1873. opt/meme/bin/ranksum_test
1874. opt/meme/bin/tomtom
1875. opt/meme/bin/remove-alignment-gaps
1876. opt/meme/bin/xsltproc_lite
1877. opt/meme/bin/dust
1878. opt/meme/bin/beadstring
1879. opt/meme/bin/clustalw2fasta
1880. opt/meme/bin/fasta-io
1881. opt/meme/bin/gendb
1882. opt/meme/bin/gomo
1883. opt/meme/bin/glam2format
1884. opt/meme/bin/meme.bin
1885. opt/meme/bin/mhmm-io
1886. opt/meme/bin/mhmmscan
1887. opt/meme/bin/shadow
1888. opt/meme/bin/qvalue
1889. opt/meme/bin/reduce-alignment
1890. opt/meme/bin/purge
1891. opt/meme/bin/ama
1892. opt/meme/bin/clustalw-io
1893. opt/meme/bin/fitevd
1894. opt/meme/bin/draw-mhmm
1895. opt/meme/bin/glam2scan
1896. opt/meme/bin/glam2
1897. opt/meme/bin/mhmm
1898. opt/meme/bin/mast.bin
1899. opt/meme/bin/mhmms
1900. opt/meme/bin/tree
1901. opt/meme/bin/readseq
1902. opt/meme/bin/reconcile-tree-alignment
1904. * QA Notice: Package triggers severe warnings which indicate that it
1905. * may exhibit random runtime failures.
1906. * /usr/include/bits/string3.h:105:3: warning: call to __builtin___strcpy_chk will always overflow destination buffer [enabled by default]
1908. * Please do not file a Gentoo bug and instead report the above QA
1909. * issues directly to the upstream developers of this software.
1910. * Homepage: http://meme.sdsc.edu/meme