1. * Package: sci-libs/spqr-1.2.3
2. * Repository: gentoo
3. * Maintainer: sci@gentoo.org
4. * USE: amd64 elibc_glibc kernel_linux multilib test userland_GNU
5. * FEATURES: sandbox test userpriv usersandbox
6. >>> Unpacking source...
7. >>> Unpacking SPQR-1.2.3.tar.gz to /tmp/portage/sci-libs/spqr-1.2.3/work
8. >>> Source unpacked in /tmp/portage/sci-libs/spqr-1.2.3/work
9. >>> Preparing source in /tmp/portage/sci-libs/spqr-1.2.3/work/SPQR ...
10. * Applying spqr-1.2.3-autotools.patch ...
11. [ ok ]
12. * Running eautoreconf in '/tmp/portage/sci-libs/spqr-1.2.3/work/SPQR' ...
13. * Running libtoolize --install --copy --force --automake ...
14. [ ok ]
15. * Running aclocal ...
16. [ ok ]
17. * Running autoconf ...
18. [ ok ]
19. * Running automake --add-missing --copy --foreign ...
20. [ ok ]
21. * Running elibtoolize in: SPQR/
22. * Applying portage/1.2.0 patch ...
23. * Applying sed/1.5.6 patch ...
24. * Applying as-needed/2.4.2 patch ...
25. >>> Source prepared.
26. >>> Configuring source in /tmp/portage/sci-libs/spqr-1.2.3/work/SPQR ...
27. >>> Working in BUILD_DIR: "/tmp/portage/sci-libs/spqr-1.2.3/work/spqr-1.2.3_build"
28. * econf: updating SPQR/config.sub with /usr/share/gnuconfig/config.sub
29. * econf: updating SPQR/config.guess with /usr/share/gnuconfig/config.guess
30. /tmp/portage/sci-libs/spqr-1.2.3/work/SPQR/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-dependency-tracking --docdir=/usr/share/doc/spqr-1.2.3 --enable-shared --disable-static --without-metis --without-tbb
31. configure: loading site script /usr/share/config.site
32. checking for a BSD-compatible install... /usr/bin/install -c
33. checking whether build environment is sane... yes
34. checking for a thread-safe mkdir -p... /bin/mkdir -p
35. checking for gawk... gawk
36. checking whether make sets $(MAKE)... yes
37. checking build system type... x86_64-pc-linux-gnu
38. checking host system type... x86_64-pc-linux-gnu
39. checking how to print strings... printf
40. checking for style of include used by make... GNU
41. checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
42. checking whether the C compiler works... yes
43. checking for C compiler default output file name... a.out
44. checking for suffix of executables...
45. checking whether we are cross compiling... no
46. checking for suffix of object files... o
47. checking whether we are using the GNU C compiler... yes
48. checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
49. checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
50. checking dependency style of x86_64-pc-linux-gnu-gcc... none
51. checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none
52. checking for a sed that does not truncate output... /bin/sed
53. checking for grep that handles long lines and -e... /bin/grep
54. checking for egrep... /bin/grep -E
55. checking for fgrep... /bin/grep -F
56. checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
57. checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
58. checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
59. checking the name lister (/usr/bin/nm -B) interface... BSD nm
60. checking whether ln -s works... yes
61. checking the maximum length of command line arguments... 1572864
62. checking whether the shell understands some XSI constructs... yes
63. checking whether the shell understands "+="... yes
64. checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
65. checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
66. checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
67. checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
68. checking how to recognize dependent libraries... pass_all
69. checking for x86_64-pc-linux-gnu-dlltool... no
70. checking for dlltool... no
71. checking how to associate runtime and link libraries... printf %s\n
72. checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
73. checking for archiver @FILE support... @
74. checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
75. checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
76. checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
77. checking for sysroot... no
78. checking for x86_64-pc-linux-gnu-mt... no
79. checking for mt... mt
80. checking if mt is a manifest tool... no
81. checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
82. checking for ANSI C header files... yes
83. checking for sys/types.h... yes
84. checking for sys/stat.h... yes
85. checking for stdlib.h... yes
86. checking for string.h... yes
87. checking for memory.h... yes
88. checking for strings.h... yes
89. checking for inttypes.h... yes
90. checking for stdint.h... yes
91. checking for unistd.h... yes
92. checking for dlfcn.h... yes
93. checking for objdir... .libs
94. checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
95. checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
96. checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
97. checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
98. checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
99. checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
100. checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
101. checking whether -lc should be explicitly linked in... no
102. checking dynamic linker characteristics... GNU/Linux ld.so
103. checking how to hardcode library paths into programs... immediate
104. checking whether stripping libraries is possible... yes
105. checking if libtool supports shared libraries... yes
106. checking whether to build shared libraries... yes
107. checking whether to build static libraries... no
108. checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
109. checking whether we are using the GNU C++ compiler... yes
110. checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
111. checking dependency style of x86_64-pc-linux-gnu-g++... none
112. checking dependency style of x86_64-pc-linux-gnu-g++... (cached) none
113. checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
114. checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
115. checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
116. checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
117. checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC
118. checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
119. checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
120. checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
121. checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes
122. checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
123. checking dynamic linker characteristics... (cached) GNU/Linux ld.so
124. checking how to hardcode library paths into programs... immediate
125. checking for sqrt in -lm... yes
126. checking for zlarft_ in -llapack... no
127. checking UFconfig.h usability... yes
128. checking UFconfig.h presence... yes
129. checking for UFconfig.h... yes
130. checking cholmod.h usability... yes
131. checking cholmod.h presence... yes
132. checking for cholmod.h... yes
133. checking for cholmod_solve in -lcholmod... no
134. configure: error: Cannot find libcholmod
136. !!! Please attach the following file when seeking support:
137. !!! /tmp/portage/sci-libs/spqr-1.2.3/work/spqr-1.2.3_build/config.log
138. * ERROR: sci-libs/spqr-1.2.3 failed (configure phase):
139. * econf failed
140. *
141. * Call stack:
142. * ebuild.sh, line 89: Called src_configure
143. * environment, line 3249: Called autotools-utils_src_configure
144. * environment, line 766: Called econf '--docdir=/usr/share/doc/spqr-1.2.3' '--enable-shared' '--disable-static' '--without-metis' '--without-tbb'
145. * phase-helpers.sh, line 501: Called die
146. * The specific snippet of code:
147. * die "econf failed"
148. *
149. * If you need support, post the output of `emerge --info '=sci-libs/spqr-1.2.3'`,
150. * the complete build log and the output of `emerge -pqv '=sci-libs/spqr-1.2.3'`.
151. sed: couldn't open temporary file /etc/portage/package.mask/sedYcxMNF: Permission denied