1. * Package: sci-chemistry/openbabel-python-2.3.1
2. * Repository: gentoo
3. * Maintainer: sci-chemistry@gentoo.org
4. * USE: amd64 elibc_glibc kernel_linux multilib test userland_GNU
5. * FEATURES: sandbox test userpriv usersandbox
6. >>> Unpacking source...
7. >>> Unpacking openbabel-2.3.1.tar.gz to /tmp/portage/sci-chemistry/openbabel-python-2.3.1/work
8. >>> Source unpacked in /tmp/portage/sci-chemistry/openbabel-python-2.3.1/work
9. >>> Preparing source in /tmp/portage/sci-chemistry/openbabel-python-2.3.1/work/openbabel-2.3.1 ...
10. * Applying openbabel-python-2.3.1-system_openbabel.patch ...
11. [ ok ]
12. /usr/include/openbabel-2.0/openbabel/isomorphism.h:159: Warning 325: Nested class not currently supported (Functor ignored)
13. >>> Source prepared.
14. >>> Configuring source in /tmp/portage/sci-chemistry/openbabel-python-2.3.1/work/openbabel-2.3.1 ...
15. >>> Source configured.
16. >>> Compiling source in /tmp/portage/sci-chemistry/openbabel-python-2.3.1/work/openbabel-2.3.1 ...
17. * Building of sci-chemistry/openbabel-python-2.3.1 with CPython 2.7...
18. [scripts]
19. python2.7 python/setup.py build -b build-2.7
20. running build
21. running build_py
22. creating build-2.7
23. creating build-2.7/lib.linux-x86_64-2.7
24. copying openbabel.py -> build-2.7/lib.linux-x86_64-2.7
25. copying pybel.py -> build-2.7/lib.linux-x86_64-2.7
26. warning: build_py: byte-compiling is disabled, skipping.
28. running build_ext
29. building '_openbabel' extension
30. creating build-2.7/temp.linux-x86_64-2.7
31. creating build-2.7/temp.linux-x86_64-2.7/python
32. x86_64-pc-linux-gnu-g++ -pthread -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -I/usr/include/eigen2 -fPIC -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -c python/openbabel-python.cpp -o build-2.7/temp.linux-x86_64-2.7/python/openbabel-python.o
33. x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -I/usr/include/eigen2 build-2.7/temp.linux-x86_64-2.7/python/openbabel-python.o -L/usr/lib64 -lopenbabel -lpython2.7 -o build-2.7/lib.linux-x86_64-2.7/_openbabel.so
34. * Building of sci-chemistry/openbabel-python-2.3.1 with CPython 3.2...
35. [scripts]
36. python3.2 python/setup.py build -b build-3.2
37. running build
38. running build_py
39. creating build-3.2
40. creating build-3.2/lib.linux-x86_64-3.2
41. copying openbabel.py -> build-3.2/lib.linux-x86_64-3.2
42. copying pybel.py -> build-3.2/lib.linux-x86_64-3.2
43. warning: build_py: byte-compiling is disabled, skipping.
45. running build_ext
46. building '_openbabel' extension
47. creating build-3.2/temp.linux-x86_64-3.2
48. creating build-3.2/temp.linux-x86_64-3.2/python
49. x86_64-pc-linux-gnu-g++ -pthread -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -I/usr/include/eigen2 -fPIC -I/usr/include/openbabel-2.0 -I/usr/include/python3.2 -c python/openbabel-python.cpp -o build-3.2/temp.linux-x86_64-3.2/python/openbabel-python.o
50. python/openbabel-python.cpp: In function 'PyObject* SWIG_From_unsigned_SS_int(unsigned int)':
51. python/openbabel-python.cpp:5032:41: error: 'PyInt_FromSize_t' was not declared in this scope
52. error: command 'x86_64-pc-linux-gnu-g++' failed with exit status 1
53. * ERROR: sci-chemistry/openbabel-python-2.3.1 failed (compile phase):
54. * Building failed with CPython 3.2 in distutils_building() function
55. *
56. * Call stack:
57. * ebuild.sh, line 85: Called src_compile
58. * environment, line 5552: Called distutils_src_compile
59. * environment, line 1477: Called python_execute_function 'distutils_building'
60. * environment, line 3850: Called die
61. * The specific snippet of code:
62. * die "${failure_message}";
63. *
64. * If you need support, post the output of `emerge --info '=sci-chemistry/openbabel-python-2.3.1'`,
65. * the complete build log and the output of `emerge -pqv '=sci-chemistry/openbabel-python-2.3.1'`.
66. sed: couldn't open temporary file /etc/portage/package.mask/sedm30JEG: Permission denied