- * Package: sci-chemistry/mosflm-7.0.7-r1
- * Repository: gentoo
- * Maintainer: jlec@gentoo.org sci@gentoo.org
- * USE: amd64 elibc_glibc kernel_linux multilib test userland_GNU
- * FEATURES: sandbox test userpriv usersandbox
- >>> Unpacking source...
- >>> Unpacking mosflm707.tgz to /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work
- >>> Source unpacked in /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work
- >>> Preparing source in /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707 ...
- * Applying 7.0.7-parallel.patch ...
- [ ok ]
- * Applying 7.0.6-impl-dec.patch ...
- [ ok ]
- >>> Source prepared.
- >>> Configuring source in /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707 ...
- >>> Source configured.
- >>> Compiling source in /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707 ...
- make -j24 MOSHOME=/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707 DPS=/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707 FC=x86_64-pc-linux-gnu-gfortran FLINK=x86_64-pc-linux-gnu-gfortran CC=x86_64-pc-linux-gnu-gcc AR_FLAGS=vru 'MOSLIBS=-lccp4f -lccp4c -lxdl_view -lcurses -lXt -lmmdb -lccif -lstdc++' 'MCFLAGS=-O0 -fno-second-underscore' 'MOSFLAGS=-O2 -pipe -fno-second-underscore' 'FFLAGS=-O2 -pipe -fno-second-underscore' 'CFLAGS=-O2 -pipe -ggdb -march=native -ftracer' 'MOSCFLAGS=-O2 -pipe -ggdb -march=native -ftracer' 'LFLAGS=-Wl,-O1 -Wl,--as-needed'
- make dpslibs
- make[1]: Entering directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707'
- touch index/junk.a src/junk.a lib/junk.a util/junk.a cbf/junk.a
- touch lib/DPSLIB.a
- rm -f lib/DPSLIB.a
- rm -f `find ./index -name "*.a" -print`
- rm -f `find ./src -name "*.a" -print`
- rm -f `find ./lib -name "*.a" -print`
- rm -f `find ./util -name "*.a" -print`
- cd index ; make
- make[2]: Entering directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/index'
- make[2]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule.
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o bravais.o bravais.c
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/bravais ; \
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o bravais_goof.o bravais_goof.c ; \
- mv bravais_goof.o /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/index/. ; \
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/index
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/bravais ; \
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o bravais_permutate.o \
- bravais_permutate.c ; \
- mv bravais_permutate.o /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/index/. ; \
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/index
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/bravais ; \
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o bravais_transform.o \
- bravais_transform.c ; \
- mv bravais_transform.o /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/index/. ; \
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/index
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c write_ub_matrix.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c new_matrix.c
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/util; \
- make -f Makefile; \
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707
- make[3]: Entering directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/util'
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o util.o util.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o vector_math.o vector_math.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o cryst_matrix.o cryst_matrix.c
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o invert.o invert.f
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o ind_transform.o ind_transform.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o nrutil.o nrutil.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o mat_inversion.o mat_inversion.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o ind_stat.o ind_stat.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o fftn.o fftn.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o read_om.o read_om.c
- read_om.c: In function 'read_om':
- read_om.c:56:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
- read_om.c:58:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
- read_om.c:60:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o allocate.o allocate.c
- allocate.c: In function 'dps_malloc':
- allocate.c:53:7: warning: format '%d' expects argument of type 'int', but argument 5 has type 'size_t' [-Wformat]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o ref_cell_on_xyz.o ref_cell_on_xyz.c
- ar ruv ../../../lib/libdps.a util.o vector_math.o cryst_matrix.o invert.o ind_transform.o nrutil.o mat_inversion.o ind_stat.o fftn.o read_om.o allocate.o ref_cell_on_xyz.o
- ar: creating ../../../lib/libdps.a
- a - util.o
- a - vector_math.o
- a - cryst_matrix.o
- a - invert.o
- a - ind_transform.o
- a - nrutil.o
- a - mat_inversion.o
- a - ind_stat.o
- a - fftn.o
- a - read_om.o
- a - allocate.o
- a - ref_cell_on_xyz.o
- chmod 644 ../../../lib/libdps.a
- cd fftpack; make -f Makefile
- make[4]: Entering directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/util/fftpack'
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cfftb.o cfftb.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cfftb1.o cfftb1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cfftf.o cfftf.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cfftf1.o cfftf1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cffti.o cffti.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cffti1.o cffti1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cosqb.o cosqb.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cosqb1.o cosqb1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cosqf.o cosqf.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cosqf1.o cosqf1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cosqi.o cosqi.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o cost.o cost.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o costi.o costi.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o ezfft1.o ezfft1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o ezfftb.o ezfftb.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o ezfftf.o ezfftf.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o ezffti.o ezffti.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passb.o passb.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passb2.o passb2.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passb3.o passb3.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passb4.o passb4.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passb5.o passb5.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passf.o passf.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passf2.o passf2.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passf3.o passf3.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passf4.o passf4.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o passf5.o passf5.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o pimach.o pimach.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radb2.o radb2.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radb3.o radb3.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radb4.o radb4.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radb5.o radb5.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radbg.o radbg.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radf2.o radf2.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radf3.o radf3.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radf4.o radf4.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radf5.o radf5.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o radfg.o radfg.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o rfftb.o rfftb.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o rfftb1.o rfftb1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o rfftf.o rfftf.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o rfftf1.o rfftf1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o rffti.o rffti.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o rffti1.o rffti1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o sinqb.o sinqb.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o sinqf.o sinqf.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o sinqi.o sinqi.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o sint.o sint.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o sint1.o sint1.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o sinti.o sinti.f
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o tfftpk.o tfftpk.f
- ar ruv ../../../../lib/libfftpack.a cfftb.o cfftb1.o cfftf.o cfftf1.o cffti.o cffti1.o cosqb.o cosqb1.o cosqf.o cosqf1.o cosqi.o cost.o costi.o ezfft1.o ezfftb.o ezfftf.o ezffti.o passb.o passb2.o passb3.o passb4.o passb5.o passf.o passf2.o passf3.o passf4.o passf5.o pimach.o radb2.o radb3.o radb4.o radb5.o radbg.o radf2.o radf3.o radf4.o radf5.o radfg.o rfftb.o rfftb1.o rfftf.o rfftf1.o rffti.o rffti1.o sinqb.o sinqf.o sinqi.o sint.o sint1.o sinti.o tfftpk.o
- ar: creating ../../../../lib/libfftpack.a
- a - cfftb.o
- a - cfftb1.o
- a - cfftf.o
- a - cfftf1.o
- a - cffti.o
- a - cffti1.o
- a - cosqb.o
- a - cosqb1.o
- a - cosqf.o
- a - cosqf1.o
- a - cosqi.o
- a - cost.o
- a - costi.o
- a - ezfft1.o
- a - ezfftb.o
- a - ezfftf.o
- a - ezffti.o
- a - passb.o
- a - passb2.o
- a - passb3.o
- a - passb4.o
- a - passb5.o
- a - passf.o
- a - passf2.o
- a - passf3.o
- a - passf4.o
- a - passf5.o
- a - pimach.o
- a - radb2.o
- a - radb3.o
- a - radb4.o
- a - radb5.o
- a - radbg.o
- a - radf2.o
- a - radf3.o
- a - radf4.o
- a - radf5.o
- a - radfg.o
- a - rfftb.o
- a - rfftb1.o
- a - rfftf.o
- a - rfftf1.o
- a - rffti.o
- a - rffti1.o
- a - sinqb.o
- a - sinqf.o
- a - sinqi.o
- a - sint.o
- a - sint1.o
- a - sinti.o
- a - tfftpk.o
- chmod 644 ../../../../lib/libfftpack.a
- make[4]: Leaving directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/util/fftpack'
- cd filec; make -f Makefile
- make[4]: Entering directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/util/filec'
- make wrfile.o wrmad.o wrfits.o wrswap.o wrhead.o wrcal.o rdcal.o rdfile.o rdfits.o rdbinary.o rdmad.o rdhead.o rdctbl.o wrctbl.o dskhd.o dskio.o swpbyt.o getbo.o filec_debug.o jzext.o namfil.o
- make[5]: Entering directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/util/filec'
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. wrfile.c
- wrfile.c: In function 'wrfile':
- wrfile.c:38:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. wrmad.c
- wrmad.c: In function 'wrmad':
- wrmad.c:50:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. wrfits.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. wrswap.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. wrhead.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. wrcal.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. rdcal.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. rdfile.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. rdfits.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. rdbinary.c
- rdbinary.c: In function 'rdbinary':
- rdbinary.c:87:19: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. rdmad.c
- rdmad.c: In function 'rdmad':
- rdmad.c:241:5: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat]
- rdmad.c:279:4: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. rdhead.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. rdctbl.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. wrctbl.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. dskhd.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. dskio.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. swpbyt.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. getbo.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. filec_debug.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. jzext.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I. namfil.c
- namfil.c: In function 'namfil':
- namfil.c:81:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
- namfil.c:81:38: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
- make[5]: Leaving directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/util/filec'
- ar rv ../../../../lib/libfilec.a wrfile.o wrmad.o wrfits.o wrswap.o wrhead.o wrcal.o rdcal.o rdfile.o rdfits.o rdbinary.o rdmad.o rdhead.o rdctbl.o wrctbl.o dskhd.o dskio.o swpbyt.o getbo.o filec_debug.o jzext.o namfil.o
- ar: creating ../../../../lib/libfilec.a
- a - wrfile.o
- a - wrmad.o
- a - wrfits.o
- a - wrswap.o
- a - wrhead.o
- a - wrcal.o
- a - rdcal.o
- a - rdfile.o
- a - rdfits.o
- a - rdbinary.o
- a - rdmad.o
- a - rdhead.o
- a - rdctbl.o
- a - wrctbl.o
- a - dskhd.o
- a - dskio.o
- a - swpbyt.o
- a - getbo.o
- a - filec_debug.o
- a - jzext.o
- a - namfil.o
- if [ -f /usr/bin/ranlib ]; then /usr/bin/ranlib ../../../../lib/libfilec.a; fi
- rm -f wrfile.o wrmad.o wrfits.o wrswap.o wrhead.o wrcal.o rdcal.o rdfile.o rdfits.o rdbinary.o rdmad.o rdhead.o rdctbl.o wrctbl.o dskhd.o dskio.o swpbyt.o getbo.o filec_debug.o jzext.o namfil.o
- make[4]: Leaving directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/util/filec'
- make[3]: Leaving directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/util'
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/index ; \
- make -f Makefile ; \
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707
- make[3]: Entering directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/index'
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o index.o index.c
- x86_64-pc-linux-gnu-gfortran -O2 -pipe -fno-second-underscore -c -o error_exit.o error_exit.f
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o ind_gen_direct.o ind_gen_direct.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o ind_sort_merge.o ind_sort_merge.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o ind_choose.o ind_choose.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o ind_help.o ind_help.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o ind_fortran.o ind_fortran.c
- ar ruv ../../../lib/libdps_index.a index.o error_exit.o ind_gen_direct.o ind_sort_merge.o ind_choose.o ind_help.o ind_fortran.o
- ar: creating ../../../lib/libdps_index.a
- a - index.o
- a - error_exit.o
- a - ind_gen_direct.o
- a - ind_sort_merge.o
- a - ind_choose.o
- a - ind_help.o
- a - ind_fortran.o
- chmod 644 ../../../lib/libdps_index.a
- make[3]: Leaving directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/src/dps/index'
- ar ru /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/lib/libdps_bravais.a bravais.o bravais_goof.o bravais_permutate.o bravais_transform.o
- ar: creating /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/lib/libdps_bravais.a
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/lib ; rm -f ________64ELEL_
- ar ru /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/lib/dps_index.a bravais.o bravais_goof.o bravais_permutate.o bravais_transform.o write_ub_matrix.o new_matrix.o
- ar: creating /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/lib/dps_index.a
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/lib ; rm -f ________64ELEL_ ; \
- ar x dps_index.a ; rm -f ________64ELEL_ ; \
- ar x libdps.a ; rm -f ________64ELEL_ ; \
- ar x libfftpack.a ; rm -f ________64ELEL_ ; \
- ar x libdps_index.a ; rm -f ________64ELEL_ ; \
- ar vru DPSLIB.a `ls *.o` ; rm -f ________64ELEL_ ; \
- rm -f *.o ; \
- rm -f dps_index.a ; \
- cd /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707
- ar: creating DPSLIB.a
- a - allocate.o
- a - bravais.o
- a - bravais_goof.o
- a - bravais_permutate.o
- a - bravais_transform.o
- a - cfftb.o
- a - cfftb1.o
- a - cfftf.o
- a - cfftf1.o
- a - cffti.o
- a - cffti1.o
- a - cosqb.o
- a - cosqb1.o
- a - cosqf.o
- a - cosqf1.o
- a - cosqi.o
- a - cost.o
- a - costi.o
- a - cryst_matrix.o
- a - error_exit.o
- a - ezfft1.o
- a - ezfftb.o
- a - ezfftf.o
- a - ezffti.o
- a - fftn.o
- a - ind_choose.o
- a - ind_fortran.o
- a - ind_gen_direct.o
- a - ind_help.o
- a - ind_sort_merge.o
- a - ind_stat.o
- a - ind_transform.o
- a - index.o
- a - invert.o
- a - mat_inversion.o
- a - new_matrix.o
- a - nrutil.o
- a - passb.o
- a - passb2.o
- a - passb3.o
- a - passb4.o
- a - passb5.o
- a - passf.o
- a - passf2.o
- a - passf3.o
- a - passf4.o
- a - passf5.o
- a - pimach.o
- a - radb2.o
- a - radb3.o
- a - radb4.o
- a - radb5.o
- a - radbg.o
- a - radf2.o
- a - radf3.o
- a - radf4.o
- a - radf5.o
- a - radfg.o
- a - read_om.o
- a - ref_cell_on_xyz.o
- a - rfftb.o
- a - rfftb1.o
- a - rfftf.o
- a - rfftf1.o
- a - rffti.o
- a - rffti1.o
- a - sinqb.o
- a - sinqf.o
- a - sinqi.o
- a - sint.o
- a - sint1.o
- a - sinti.o
- a - tfftpk.o
- a - util.o
- a - vector_math.o
- a - write_ub_matrix.o
- make[2]: Leaving directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/index'
- if [ -f /usr/bin/ranlib ]; then /usr/bin/ranlib lib/DPSLIB.a ; fi
- rm -f lib/libdps_bravais.a lib/libdps_index.a lib/libfilec.a \
- lib/libfftpack.a lib/libdps.a
- make[1]: Leaving directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707'
- make -C mosflm
- make[1]: Entering directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/mosflm'
- x86_64-pc-linux-gnu-gfortran -c -O0 -fno-second-underscore control.f
- x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fno-second-underscore mosflm_all_ip_inc.f
- x86_64-pc-linux-gnu-gfortran -c -O0 -fno-second-underscore unoptimizable.f
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c pck.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c ctimer.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c chelp.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o open_socket.o open_socket.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o close_socket.o close_socket.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o read_socket.o read_socket.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o write_socket.o write_socket.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -I../jpg mosflm_jpeg.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o matzerr.o matzerr.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o hklmanage.o hklmanage.c
- x86_64-pc-linux-gnu-gfortran -c -O0 -fno-second-underscore torefix.f
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o bravais_fortran.o bravais_fortran.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c cbfwrap.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c pilatus_c.c
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -c -o fileaccess.o fileaccess.c
- close_socket.c: In function 'close_socket_':
- close_socket.c:21:10: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- chelp.c: In function 'manipulate_tree':
- chelp.c:324:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
- chelp.c: In function 'read_input_file':
- chelp.c:96:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
- chelp.c:109:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
- chelp.c:122:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
- write_socket.c: In function 'write_socket_section_':
- write_socket.c:40:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- write_socket.c: In function 'write_socket_length_':
- write_socket.c:24:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- write_socket.c:25:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c: In function 'mosflm_init_destination':
- mosflm_jpeg.c:198:3: warning: incompatible implicit declaration of built-in function 'memset' [enabled by default]
- mosflm_jpeg.c: In function 'mosflm_empty_output_buffer':
- mosflm_jpeg.c:215:3: warning: incompatible implicit declaration of built-in function 'memset' [enabled by default]
- mosflm_jpeg.c: In function 'mosflm_write_jpeg':
- mosflm_jpeg.c:463:5: warning: incompatible implicit declaration of built-in function 'memset' [enabled by default]
- mosflm_jpeg.c: In function 'jpeg_set_filename_':
- mosflm_jpeg.c:493:5: warning: incompatible implicit declaration of built-in function 'memset' [enabled by default]
- mosflm_jpeg.c:494:5: warning: incompatible implicit declaration of built-in function 'strncpy' [enabled by default]
- mosflm_jpeg.c: In function 'write_colour_jpeg_':
- mosflm_jpeg.c:547:8: warning: incompatible implicit declaration of built-in function 'strlen' [enabled by default]
- bravais_fortran.c: In function 'bravais_fortran_':
- bravais_fortran.c:28:5: warning: passing argument 4 of 'bravais' from incompatible pointer type [enabled by default]
- In file included from bravais_fortran.c:5:0:
- ../util/bravais.h:24:6: note: expected 'char (*)[3]' but argument is of type 'char *'
- read_socket.c: In function 'read_socket_':
- read_socket.c:70:12: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c: In function 'mosflm_write_jpeg':
- mosflm_jpeg.c:460:10: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c: In function 'mosflm_write_ppm':
- mosflm_jpeg.c:330:10: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c:340:7: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c:350:7: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c:361:12: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c:362:12: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c:369:12: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c:370:12: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c:379:10: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c: In function 'mosflm_term_destination_bin':
- mosflm_jpeg.c:269:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c: In function 'mosflm_term_destination':
- mosflm_jpeg.c:255:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c: In function 'mosflm_empty_output_bin':
- mosflm_jpeg.c:230:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- mosflm_jpeg.c: In function 'mosflm_empty_output_buffer':
- mosflm_jpeg.c:213:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
- In file included from /usr/include/string.h:642:0,
- from pilatus_c.c:9:
- In function 'strcpy',
- inlined from 'pilatus_c_' at pilatus_c.c:148:13:
- /usr/include/bits/string3.h:105:3: warning: call to __builtin___memcpy_chk will always overflow destination buffer [enabled by default]
- mosflm_all_ip_inc.f:40664.36:
- CALL MXD_IMG_SYMS(IVHIMG,N,IX,IY,
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:46284.36:
- CALL MXD_IMG_SYMS(IVHIMG,N,IX,IY,
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:125799.33:
- CALL MXD_GET_EVENTS(NUMVH, IVHLIST, IVH)
- 1
- Warning: Rank mismatch in argument 'ivhlist' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:39568.44:
- CALL MXD_IMG_VECS(IVHIMG,BOX_VEC,NVEC,IXSBOX,IYSBOX,
- 1
- Warning: Rank mismatch in argument 'ixsbox' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:171674.18:
- CALL GETBLK(IMAGE(IPOINT),NBYTE,IBLK,ISWAP,IERR)
- 1
- Warning: Type mismatch in argument 'strip' at (1); passed INTEGER(2) to INTEGER(1)
- mosflm_all_ip_inc.f:141256.22:
- CALL GETBLK(IMAGE(IPOINT),NBYTE,IBLK+NHEAD,ISWAP,IERR)
- 1
- Warning: Type mismatch in argument 'strip' at (1); passed INTEGER(2) to INTEGER(1)
- mosflm_all_ip_inc.f:65106.34:
- CALL GETBLK(BFOUR,NNBYTES,1,BYTSWAP,IERR)
- 1
- Warning: Type mismatch in argument 'iswap' at (1); passed LOGICAL(4) to INTEGER(4)
- mosflm_all_ip_inc.f:7837.20:
- $ (MAXX+startx,MAXY+starty,1,5,isize)
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (rank-1 and scalar)
- mosflm_all_ip_inc.f:40273.46:
- CALL MXD_IMG_VECS(IVHIMG,CIRC_VEC,NSTEP,IXS,IYS,
- 1
- Warning: Rank mismatch in argument 'ixsbox' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:37565.20:
- $ WAVE,RESCIR)
- 1
- Warning: Rank mismatch in argument 'rescir' at (1) (rank-1 and scalar)
- mosflm_all_ip_inc.f:37567.20:
- $ WAVE,RESCIR)
- 1
- Warning: Rank mismatch in argument 'rescir' at (1) (rank-1 and scalar)
- mosflm_all_ip_inc.f:86343.56:
- + SPGNAM,NUMSPG,PGNAME,NSYM,NSYMP,RSYM,INERR)
- 1
- Warning: Type mismatch in argument 'ierr' at (1); passed LOGICAL(4) to INTEGER(4)
- mosflm_all_ip_inc.f:218516.37:
- CALL MINV33(AMATINV,AMAT,DA)
- 1
- Warning: Rank mismatch in argument 'd' at (1) (scalar and rank-2)
- mosflm_all_ip_inc.f:175164.37:
- CALL MINV33(BMATINV,BMAT,DA)
- 1
- Warning: Rank mismatch in argument 'd' at (1) (scalar and rank-2)
- mosflm_all_ip_inc.f:31519.58:
- IF(.NOT.RFIXCELL)CALL PERMUTATE(SCELL,AMAT,ICRYST,LATTYP)
- 1
- Warning: Type mismatch in argument 'kicryst' at (1); passed CHARACTER(1) to INTEGER(4)
- mosflm_all_ip_inc.f:38122.20:
- CALL CNVPIX(IXPIX,IYPIX, ISTAT)
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:118676.46:
- + IVHIMG,IVHBAS,IMG_X,IMG_Y,ICSET,IMAGE,IFTYPE,
- 1
- Warning: Rank mismatch in argument 'image' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:118695.34:
- CALL MXD_IMG_NEW(IVHIMG, IMAGE, IDISP_NOW,IERR)
- 1
- Warning: Rank mismatch in argument 'image' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:119224.33:
- CALL MXD_OPEN_VIEW(NUMC,NCOLORS,NPLANES,IERR)
- 1
- Warning: Rank mismatch in argument 'ncolors' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:44148.44:
- CALL MXD_IMG_VECS(IVHIMG,IRV_VEC,NVEC,IXSRV,IYSRV,
- 1
- Warning: Rank mismatch in argument 'ixsbox' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:147114.54:
- IF(WINOPEN.AND.DRAW.AND.DEBUG(62))call dspbox(IX,IY,1,3,4,4)
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (rank-1 and scalar)
- mosflm_all_ip_inc.f:147128.59:
- IF(WINOPEN.AND.DRAW.AND.DEBUG(62))CALL DSPXCRS(IX,IY,1,1,6)
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (rank-1 and scalar)
- mosflm_all_ip_inc.f:147141.59:
- IF(WINOPEN.AND.DRAW.AND.DEBUG(62))CALL DSPXCRS(IX,IY,1,2,6)
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (rank-1 and scalar)
- mosflm_all_ip_inc.f:147151.59:
- IF(WINOPEN.AND.DRAW.AND.DEBUG(62))CALL DSPXCRS(IX,IY,1,3,6)
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (rank-1 and scalar)
- mosflm_all_ip_inc.f:147160.59:
- IF(WINOPEN.AND.DRAW.AND.DEBUG(62))CALL DSPXCRS(IX,IY,1,4,6)
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (rank-1 and scalar)
- mosflm_all_ip_inc.f:88880.31:
- CALL PREDICT_SPOTS(0,'0',0,0.0,0,IERR)
- 1
- Warning: Actual argument contains too few elements for dummy argument 'argv' (1/16000) at (1)
- mosflm_all_ip_inc.f:128410.42:
- CALL MXD_GET_EVENTS_TIMEOUT(NUMVH,IVHLIST,MSECS,
- 1
- Warning: Rank mismatch in argument 'ivhlist' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:128434.34:
- CALL MXD_GET_EVENTS(NUMVH,IVHLIST,IVH)
- 1
- Warning: Rank mismatch in argument 'ivhlist' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:128626.30:
- CALL DSPXCRS(IXP,IYP,1,5,IISIZE)
- 1
- Warning: Rank mismatch in argument 'ix' at (1) (rank-1 and scalar)
- mosflm_all_ip_inc.f:135085.32:
- CALL MXD_GET_EVENTS(NUMVH,IVHLIST,IVH)
- 1
- Warning: Rank mismatch in argument 'ivhlist' at (1) (scalar and rank-1)
- mosflm_all_ip_inc.f:133307.29:
- $ RMSRES,PHILIM,RAST,YSCAL)
- 1
- Warning: Actual argument contains too few elements for dummy argument 'philim' (2/3) at (1)
- mosflm_all_ip_inc.f:136216.28:
- CALL SHUTDOWN('NEOCTRL',7)
- 1
- Warning: Character length of actual argument shorter than of dummy argument 'calledfrom' (7/80) at (1)
- mosflm_all_ip_inc.f:180642.45:
- CALL MERGHKL(IHKLSTR,NSTRAT,NUNIQ,NTOT,IHKLSTR(1,NSTART))
- 1
- Warning: Type mismatch in argument 'iorder' at (1); passed INTEGER(2) to INTEGER(4)
- mosflm_all_ip_inc.f:180650.36:
- CALL COMPLETE(IHKLSTR,NTOT,IHKLSTR(1,NSTART))
- 1
- Warning: Type mismatch in argument 'iorder' at (1); passed INTEGER(2) to INTEGER(4)
- mosflm_all_ip_inc.f:194583.33:
- CALL SPBDREAD(ODBOX(1),IBUF,LEN)
- 1
- Warning: Actual argument contains too few elements for dummy argument 'ibuf' (12/14) at (1)
- x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed control.o mosflm_all_ip_inc.o unoptimizable.o pck.o ctimer.o chelp.o open_socket.o close_socket.o read_socket.o write_socket.o mosflm_jpeg.o matzerr.o hklmanage.o torefix.o bravais_fortran.o cbfwrap.o pilatus_c.o fileaccess.o /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/lib/DPSLIB.a -lcbf -limg -ljpeg \
- -lccp4f -lccp4c -lxdl_view -lcurses -lXt -lmmdb -lccif -lstdc++ -o ../bin/ipmosflm
- make[1]: Leaving directory `/tmp/portage/sci-chemistry/mosflm-7.0.7-r1/work/mosflm707/mosflm'
- >>> Source compiled.
- >>> Install mosflm-7.0.7-r1 into /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/image/ category sci-chemistry
- >>> Completed installing mosflm-7.0.7-r1 into /tmp/portage/sci-chemistry/mosflm-7.0.7-r1/image/
- * QA Notice: make jobserver unavailable:
- *
- * make[2]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule.
- strip: x86_64-pc-linux-gnu-strip --strip-unneeded -R .comment -R .GCC.command.line
- usr/libexec/ccp4/bin/ipmosflm
- * QA Notice: Package triggers severe warnings which indicate that it
- * may exhibit random runtime failures.
- * mosflm_jpeg.c:198:3: warning: incompatible implicit declaration of built-in function 'memset' [enabled by default]
- * mosflm_jpeg.c:215:3: warning: incompatible implicit declaration of built-in function 'memset' [enabled by default]
- * mosflm_jpeg.c:463:5: warning: incompatible implicit declaration of built-in function 'memset' [enabled by default]
- * mosflm_jpeg.c:493:5: warning: incompatible implicit declaration of built-in function 'memset' [enabled by default]
- * mosflm_jpeg.c:494:5: warning: incompatible implicit declaration of built-in function 'strncpy' [enabled by default]
- * mosflm_jpeg.c:547:8: warning: incompatible implicit declaration of built-in function 'strlen' [enabled by default]
- * QA Notice: Package triggers severe warnings which indicate that it
- * may exhibit random runtime failures.
- * /usr/include/bits/string3.h:105:3: warning: call to __builtin___memcpy_chk will always overflow destination buffer [enabled by default]
- * Please do not file a Gentoo bug and instead report the above QA
- * issues directly to the upstream developers of this software.
- * Homepage: http://www.mrc-lmb.cam.ac.uk/harry/mosflm/