1. * Package: sci-biology/meme-4.8.1-r1
2. * Repository: gentoo
3. * Maintainer: weaver@gentoo.org sci-biology@gentoo.org
4. * USE: abi_x86_64 amd64 elibc_glibc kernel_linux multilib test userland_GNU
5. * FEATURES: sandbox test userpriv usersandbox
6. Installed LAPACK for library directory lib64
7. [1] reference *
8. Installed BLAS for library directory lib64
9. [1] reference *
10. Installed CBLAS for library directory lib64
11. [1] gsl
12. [2] reference *
13. >>> Unpacking source...
14. >>> Unpacking meme_4.8.1.tar.gz to /tmp/portage/sci-biology/meme-4.8.1-r1/work
15. >>> Source unpacked in /tmp/portage/sci-biology/meme-4.8.1-r1/work
16. >>> Preparing source in /tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1 ...
17. * Applying meme-4.8.1-Makefile.am.patch ...
18. [ ok ]
19. * Running eautoreconf in '/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1' ...
20. * Running libtoolize --install --copy --force --automake ...
21. [ ok ]
22. * Running aclocal ...
23. [ ok ]
24. * Running autoconf ...
25. [ ok ]
26. * Running autoheader ...
27. [ ok ]
28. * Running automake --add-missing --copy ...
29. [ ok ]
30. * Running elibtoolize in: meme_4.8.1/src/libxml2/
31. * Applying portage/1.5.10 patch ...
32. * Applying sed/1.5.6 patch ...
33. * Applying as-needed/1.5 patch ...
34. * Running elibtoolize in: meme_4.8.1/config/
35. * Applying portage/1.2.0 patch ...
36. * Applying sed/1.5.6 patch ...
37. * Applying as-needed/2.4.2 patch ...
38. >>> Source prepared.
39. >>> Configuring source in /tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1 ...
40. * econf: updating meme_4.8.1/config/config.sub with /usr/share/gnuconfig/config.sub
41. * econf: updating meme_4.8.1/config/config.guess with /usr/share/gnuconfig/config.guess
42. ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-dependency-tracking --sysconfdir=/etc/meme --with-logs=/var/log/meme --disable-debug --enable-serial
43. configure: loading site script /usr/share/config.site
44. checking for a BSD-compatible install... /usr/bin/install -c
45. checking whether build environment is sane... yes
46. checking for a thread-safe mkdir -p... /bin/mkdir -p
47. checking for gawk... gawk
48. checking whether make sets $(MAKE)... yes
49. checking how to create a pax tar archive... gnutar
50. checking for style of include used by make... GNU
51. checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
52. checking whether the C compiler works... yes
53. checking for C compiler default output file name... a.out
54. checking for suffix of executables...
55. checking whether we are cross compiling... no
56. checking for suffix of object files... o
57. checking whether we are using the GNU C compiler... yes
58. checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
59. checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
60. checking dependency style of x86_64-pc-linux-gnu-gcc... none
61. checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
62. checking build system type... x86_64-pc-linux-gnu
63. checking host system type... x86_64-pc-linux-gnu
64. checking how to print strings... printf
65. checking for a sed that does not truncate output... /bin/sed
66. checking for grep that handles long lines and -e... /bin/grep
67. checking for egrep... /bin/grep -E
68. checking for fgrep... /bin/grep -F
69. checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
70. checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
71. checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
72. checking the name lister (/usr/bin/nm -B) interface... BSD nm
73. checking whether ln -s works... yes
74. checking the maximum length of command line arguments... 1572864
75. checking whether the shell understands some XSI constructs... yes
76. checking whether the shell understands "+="... yes
77. checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
78. checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
79. checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
80. checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
81. checking how to recognize dependent libraries... pass_all
82. checking for x86_64-pc-linux-gnu-dlltool... no
83. checking for dlltool... no
84. checking how to associate runtime and link libraries... printf %s\n
85. checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
86. checking for archiver @FILE support... @
87. checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
88. checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
89. checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
90. checking for sysroot... no
91. checking for x86_64-pc-linux-gnu-mt... no
92. checking for mt... mt
93. checking if mt is a manifest tool... no
94. checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
95. checking for ANSI C header files... yes
96. checking for sys/types.h... yes
97. checking for sys/stat.h... yes
98. checking for stdlib.h... yes
99. checking for string.h... yes
100. checking for memory.h... yes
101. checking for strings.h... yes
102. checking for inttypes.h... yes
103. checking for stdint.h... yes
104. checking for unistd.h... yes
105. checking for dlfcn.h... yes
106. checking for objdir... .libs
107. checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
108. checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
109. checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
110. checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
111. checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
112. checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
113. checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
114. checking whether -lc should be explicitly linked in... no
115. checking dynamic linker characteristics... GNU/Linux ld.so
116. checking how to hardcode library paths into programs... immediate
117. checking whether stripping libraries is possible... yes
118. checking if libtool supports shared libraries... yes
119. checking whether to build shared libraries... yes
120. checking whether to build static libraries... yes
121. checking whether make sets $(MAKE)... (cached) yes
122. checking for ld... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
123. checking for sed... (cached) /bin/sed
124. checking for mpicc... /usr/bin/mpicc
125. checking for mail... /usr/bin/mail
126. checking for sendmail... /usr/sbin/sendmail
127. checking for perl... /usr/bin/perl
128. checking for python... /usr/bin/python
129. checking for convert... /usr/bin/convert
130. checking for gs... /usr/bin/gs
131. checking for xml2-config... /usr/bin/xml2-config
132. checking for xslt-config... /usr/bin/xslt-config
133. checking for ant... /usr/bin/ant
134. checking for elinks... yes
135. checking for isnan, sqrt, log, exp, fabs, pow, floor, ceil in -lm... yes
136. checking for xmlParseFile in -lxml2... yes
137. checking for xsltParseStylesheetFile in -lxslt... yes
138. checking for exsltRegisterAll in -lexslt... yes
139. checking for ANSI C header files... (cached) yes
140. checking for sys/wait.h that is POSIX.1 compatible... yes
141. checking arpa/inet.h usability... yes
142. checking arpa/inet.h presence... yes
143. checking for arpa/inet.h... yes
144. checking ctype.h usability... yes
145. checking ctype.h presence... yes
146. checking for ctype.h... yes
147. checking fcntl.h usability... yes
148. checking fcntl.h presence... yes
149. checking for fcntl.h... yes
150. checking limits.h usability... yes
151. checking limits.h presence... yes
152. checking for limits.h... yes
153. checking netdb.h usability... yes
154. checking netdb.h presence... yes
155. checking for netdb.h... yes
156. checking netinet/in.h usability... yes
157. checking netinet/in.h presence... yes
158. checking for netinet/in.h... yes
159. checking for stdlib.h... (cached) yes
160. checking for string.h... (cached) yes
161. checking for strings.h... (cached) yes
162. checking sys/socket.h usability... yes
163. checking sys/socket.h presence... yes
164. checking for sys/socket.h... yes
165. checking sys/time.h usability... yes
166. checking sys/time.h presence... yes
167. checking for sys/time.h... yes
168. checking for unistd.h... (cached) yes
169. checking for an ANSI C-conforming const... yes
170. checking for stdbool.h that conforms to C99... yes
171. checking for _Bool... yes
172. checking for pid_t... yes
173. checking for size_t... yes
174. checking vfork.h usability... no
175. checking vfork.h presence... no
176. checking for vfork.h... no
177. checking for fork... yes
178. checking for vfork... yes
179. checking for working fork... yes
180. checking for working vfork... (cached) yes
181. checking for stdlib.h... (cached) yes
182. checking for GNU libc compatible malloc... yes
183. checking for stdlib.h... (cached) yes
184. checking for GNU libc compatible realloc... yes
185. checking return type of signal handlers... void
186. checking whether lstat correctly handles trailing slash... yes
187. checking whether stat accepts an empty string... no
188. checking for floor... yes
189. checking for getcwd... yes
190. checking for gethostbyname... yes
191. checking for isascii... yes
192. checking for memset... yes
193. checking for pow... yes
194. checking for rint... yes
195. checking for socket... yes
196. checking for sqrt... yes
197. checking for strchr... yes
198. checking for strcspn... yes
199. checking for strdup... yes
200. checking for strspn... yes
201. checking for strstr... yes
202. checking for strlcpy... no
203. checking for MPI_Comm_rank in -lmpi... yes
204. checking for perl... (cached) /usr/bin/perl
205. checking for python... (cached) /usr/bin/python
206. checking for convert... (cached) /usr/bin/convert
207. checking for gs... (cached) /usr/bin/gs
208. checking that generated files are newer than configure... done
209. configure: creating ./config.status
210. config.status: creating Makefile
211. config.status: creating doc/Makefile
212. config.status: creating doc/examples/Makefile
213. config.status: creating doc/examples/compute_prior_dist_example_output_files/Makefile
214. config.status: creating doc/examples/sample_opal_scripts/Makefile
215. config.status: creating doc/images/Makefile
216. config.status: creating etc/Makefile
217. config.status: creating src/filters/Makefile
218. config.status: creating src/filters/purge/Makefile
219. config.status: creating src/filters/dust/Makefile
220. config.status: creating scripts/Makefile
221. config.status: creating src/Makefile
222. config.status: creating src/libxml2/Makefile
223. config.status: creating src/libxml2/include/Makefile
224. config.status: creating src/libxml2/include/libxml/Makefile
225. config.status: creating src/libxslt/Makefile
226. config.status: creating src/libexslt/Makefile
227. config.status: creating src/parallel/Makefile
228. config.status: creating tests/Makefile
229. config.status: creating tests/ame/Makefile
230. config.status: creating tests/centrimo/Makefile
231. config.status: creating tests/clustalw2fasta/Makefile
232. config.status: creating tests/common/Makefile
233. config.status: creating tests/draw-mhmm/Makefile
234. config.status: creating tests/dreme/Makefile
235. config.status: creating tests/fasta-center/Makefile
236. config.status: creating tests/fimo/Makefile
237. config.status: creating tests/gomo/Makefile
238. config.status: creating tests/mast/Makefile
239. config.status: creating tests/mcast/Makefile
240. config.status: creating tests/meme/Makefile
241. config.status: creating tests/mhmm/Makefile
242. config.status: creating tests/mhmms/Makefile
243. config.status: creating tests/mhmmscan/Makefile
244. config.status: creating tests/motiph/Makefile
245. config.status: creating tests/psp-gen/Makefile
246. config.status: creating tests/qvalue/Makefile
247. config.status: creating tests/scaffold/Makefile
248. config.status: creating tests/spamo/Makefile
249. config.status: creating tests/tomtom/Makefile
250. config.status: creating tests/web/Makefile
251. config.status: creating website/Makefile
252. config.status: creating website/cgi-bin/Makefile
253. config.status: creating website/html/Makefile
254. config.status: creating website/scripts/Makefile
255. config.status: creating website/images/Makefile
256. config.status: creating config.h
257. config.status: executing depfiles commands
258. config.status: executing libtool commands
259. configure: WARNING:
260. Checking Required Perl Modules:
261. Math::CDF missing. Only required for fasta-enriched-center script (which is not called by the web scripts).
263. Checking Web and DB Modules:
264. Apache missing. Only required if running mod_perl.
265. MyInterfaces::RSATWebServices::RSATWSPortType missing. Only required for get_db_csv and update_db.
266. Avaliable from http://rsat.scmbb.ulb.ac.be/rsat/web_services/RSATWS.tar.gz .
268. Checking Optional Modules:
270. ========================
271. Configuration parameters
272. ========================
274. Install path: /usr
275. Install UID:
276. Version: 4.8.1
277. C compiler: x86_64-pc-linux-gnu-gcc
278. C compiler flags: -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__
279. Linker: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
280. Special Libs: -lmpi -lexslt -lxslt -lxml2 -lm
281. MPICC /usr/bin/mpicc
282. MPIINC -DMPI -I/usr/include
283. MPILIBDIR /usr/lib
284. MPIFLAGS -DPARALLEL
285. MPIRUN
286. MEME URL: http://tbamd64/meme
287. MEME WEB DIRECTORY: ${prefix}/web
288. MEME CONTACT: @tbamd64
289. BLOCKMAKER URL: http://blocks.fhcrc.org/blocks-bin/process_blocks.pl
290. GO-SERVER URL: http://amigo.geneontology.org/cgi-bin/amigo/
291. PERL: /usr/bin/perl
292. PYTHON: /usr/bin/python
293. CONVERT: /usr/bin/convert
294. GHOSTSCRIPT: /usr/bin/gs
295. BUILD LIBXML2: no
296. LIBXML2 compiler flags: -I/usr/include/libxml2
297. LIBXML2 libs: -lxml2 -lz -lm -ldl
298. BUILD LIBXSLT: no
299. LIBXSLT compiler flags: -I/usr/include/libxml2
300. LIBXSLT libs: -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt
301. MEME DB: ${prefix}/db
302. MEME LOGS: /var/log/meme
303. MEME TEMP FILES:
304. OPAL URL: no
305. OPAL XML: no
307. Run the following commands to compile, test and install meme:
308. make
309. make test
310. make install
312. >>> Source configured.
313. >>> Compiling source in /tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1 ...
314. make -j24
315. (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/config/missing --run autoheader)
316. rm -f stamp-h1
317. touch config.h.in
318. cd . && /bin/sh ./config.status config.h
319. config.status: creating config.h
320. config.status: config.h is unchanged
321. make all-recursive
322. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
323. Making all in src
324. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
325. echo '#define MEME_DIR "/usr"' >dir.h
326. echo '#define ETC_DIR "/etc/meme" ' >> dir.h
327. echo '#define BIN_DIR "/usr/bin" ' >> dir.h
328. make all-recursive
329. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
330. Making all in filters
331. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
332. Making all in purge
333. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/purge'
334. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c afnio.c
335. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c alphabet.c
336. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c block.c
337. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c dheap.c
338. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c gblast.c
339. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c karlin.c
340. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mheap.c
341. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mlist.c
342. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c pairaln.c
343. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c pmain.c
344. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c purge.c
345. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c random.c
346. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c seqset.c
347. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c sequence.c
348. /bin/sh ../../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lm -lmpi -lexslt -lxslt -lxml2 -lm
349. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -Wl,--as-needed /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
350. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/purge'
351. Making all in dust
352. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/dust'
353. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c tust.c
354. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c dust.c
355. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c getfa.c
356. /bin/sh ../../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o dust tust.o dust.o getfa.o -lmpi -lexslt -lxslt -lxml2 -lm
357. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o dust tust.o dust.o getfa.o -Wl,--as-needed /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
358. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/dust'
359. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
360. make[5]: Nothing to be done for `all-am'.
361. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
362. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
363. Making all in libxml2
364. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
365. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
366. make[5]: Nothing to be done for `all-am'.
367. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
368. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
369. Making all in libxslt
370. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxslt'
371. make[4]: Nothing to be done for `all'.
372. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxslt'
373. Making all in libexslt
374. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libexslt'
375. make[4]: Nothing to be done for `all'.
376. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libexslt'
377. Making all in .
378. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
379. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-alignment.lo `test -f 'alignment.c' || echo './'`alignment.c
380. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-alphabet.lo `test -f 'alphabet.c' || echo './'`alphabet.c
381. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-array.lo `test -f 'array.c' || echo './'`array.c
382. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-array-list.lo `test -f 'array-list.c' || echo './'`array-list.c
383. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-background.lo `test -f 'background.c' || echo './'`background.c
384. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-binary-search.lo `test -f 'binary-search.c' || echo './'`binary-search.c
385. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-binomial.lo `test -f 'binomial.c' || echo './'`binomial.c
386. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-build-hmm.lo `test -f 'build-hmm.c' || echo './'`build-hmm.c
387. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-buffer.lo `test -f 'buffer.c' || echo './'`buffer.c
388. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-ceqlogo.lo `test -f 'ceqlogo.c' || echo './'`ceqlogo.c
389. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-cisml.lo `test -f 'cisml.c' || echo './'`cisml.c
390. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-clustalw-io.lo `test -f 'clustalw-io.c' || echo './'`clustalw-io.c
391. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-dp.lo `test -f 'dp.c' || echo './'`dp.c
392. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-dreme-sax.lo `test -f 'dreme-sax.c' || echo './'`dreme-sax.c
393. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-eps2png.lo `test -f 'eps2png.c' || echo './'`eps2png.c
394. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-empirical-qvalue.lo `test -f 'empirical-qvalue.c' || echo './'`empirical-qvalue.c
395. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-evomodel.lo `test -f 'evomodel.c' || echo './'`evomodel.c
396. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-evomodel_with_loss.lo `test -f 'evomodel_with_loss.c' || echo './'`evomodel_with_loss.c
397. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-fasta-io.lo `test -f 'fasta-io.c' || echo './'`fasta-io.c
398. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-fisher_exact.lo `test -f 'fisher_exact.c' || echo './'`fisher_exact.c
399. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-fitevd.lo `test -f 'fitevd.c' || echo './'`fitevd.c
400. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-gendb.lo `test -f 'gendb.c' || echo './'`gendb.c
401. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-hash_alph.lo `test -f 'hash_alph.c' || echo './'`hash_alph.c
402. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c
403. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c binary-search.c -fPIC -DPIC -o .libs/libcommon_la-binary-search.o
404. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c alignment.c -fPIC -DPIC -o .libs/libcommon_la-alignment.o
405. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c array-list.c -fPIC -DPIC -o .libs/libcommon_la-array-list.o
406. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c array.c -fPIC -DPIC -o .libs/libcommon_la-array.o
407. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c alphabet.c -fPIC -DPIC -o .libs/libcommon_la-alphabet.o
408. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c build-hmm.c -fPIC -DPIC -o .libs/libcommon_la-build-hmm.o
409. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c background.c -fPIC -DPIC -o .libs/libcommon_la-background.o
410. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c binomial.c -fPIC -DPIC -o .libs/libcommon_la-binomial.o
411. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c buffer.c -fPIC -DPIC -o .libs/libcommon_la-buffer.o
412. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c ceqlogo.c -fPIC -DPIC -o .libs/libcommon_la-ceqlogo.o
413. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c cisml.c -fPIC -DPIC -o .libs/libcommon_la-cisml.o
414. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c dp.c -fPIC -DPIC -o .libs/libcommon_la-dp.o
415. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c empirical-qvalue.c -fPIC -DPIC -o .libs/libcommon_la-empirical-qvalue.o
416. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c clustalw-io.c -fPIC -DPIC -o .libs/libcommon_la-clustalw-io.o
417. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c eps2png.c -fPIC -DPIC -o .libs/libcommon_la-eps2png.o
418. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c dreme-sax.c -fPIC -DPIC -o .libs/libcommon_la-dreme-sax.o
419. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c evomodel.c -fPIC -DPIC -o .libs/libcommon_la-evomodel.o
420. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c evomodel_with_loss.c -fPIC -DPIC -o .libs/libcommon_la-evomodel_with_loss.o
421. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c fasta-io.c -fPIC -DPIC -o .libs/libcommon_la-fasta-io.o
422. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c gendb.c -fPIC -DPIC -o .libs/libcommon_la-gendb.o
423. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c fitevd.c -fPIC -DPIC -o .libs/libcommon_la-fitevd.o
424. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c fisher_exact.c -fPIC -DPIC -o .libs/libcommon_la-fisher_exact.o
425. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c hash_alph.c -fPIC -DPIC -o .libs/libcommon_la-hash_alph.o
426. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c hash_table.c -fPIC -DPIC -o .libs/libcommon_la-hash_table.o
427. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c binary-search.c -o libcommon_la-binary-search.o >/dev/null 2>&1
428. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-heap.lo `test -f 'heap.c' || echo './'`heap.c
429. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c fisher_exact.c -o libcommon_la-fisher_exact.o >/dev/null 2>&1
430. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c heap.c -fPIC -DPIC -o .libs/libcommon_la-heap.o
431. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c empirical-qvalue.c -o libcommon_la-empirical-qvalue.o >/dev/null 2>&1
432. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c binomial.c -o libcommon_la-binomial.o >/dev/null 2>&1
433. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c eps2png.c -o libcommon_la-eps2png.o >/dev/null 2>&1
434. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c hash_table.c -o libcommon_la-hash_table.o >/dev/null 2>&1
435. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-html-data.lo `test -f 'html-data.c' || echo './'`html-data.c
436. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c evomodel_with_loss.c -o libcommon_la-evomodel_with_loss.o >/dev/null 2>&1
437. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c html-data.c -fPIC -DPIC -o .libs/libcommon_la-html-data.o
438. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c clustalw-io.c -o libcommon_la-clustalw-io.o >/dev/null 2>&1
439. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-io.lo `test -f 'io.c' || echo './'`io.c
440. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c array-list.c -o libcommon_la-array-list.o >/dev/null 2>&1
441. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c fasta-io.c -o libcommon_la-fasta-io.o >/dev/null 2>&1
442. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-karlin.lo `test -f 'karlin.c' || echo './'`karlin.c
443. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-linked-list.lo `test -f 'linked-list.c' || echo './'`linked-list.c
444. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c gendb.c -o libcommon_la-gendb.o >/dev/null 2>&1
445. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c alphabet.c -o libcommon_la-alphabet.o >/dev/null 2>&1
446. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c io.c -fPIC -DPIC -o .libs/libcommon_la-io.o
447. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c hash_alph.c -o libcommon_la-hash_alph.o >/dev/null 2>&1
448. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c karlin.c -fPIC -DPIC -o .libs/libcommon_la-karlin.o
449. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c heap.c -o libcommon_la-heap.o >/dev/null 2>&1
450. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c linked-list.c -fPIC -DPIC -o .libs/libcommon_la-linked-list.o
451. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-log-hmm.lo `test -f 'log-hmm.c' || echo './'`log-hmm.c
452. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c log-hmm.c -fPIC -DPIC -o .libs/libcommon_la-log-hmm.o
453. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c buffer.c -o libcommon_la-buffer.o >/dev/null 2>&1
454. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c dp.c -o libcommon_la-dp.o >/dev/null 2>&1
455. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c dreme-sax.c -o libcommon_la-dreme-sax.o >/dev/null 2>&1
456. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c io.c -o libcommon_la-io.o >/dev/null 2>&1
457. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-logodds.lo `test -f 'logodds.c' || echo './'`logodds.c
458. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c background.c -o libcommon_la-background.o >/dev/null 2>&1
459. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c logodds.c -fPIC -DPIC -o .libs/libcommon_la-logodds.o
460. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c evomodel.c -o libcommon_la-evomodel.o >/dev/null 2>&1
461. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-mast-util.lo `test -f 'mast-util.c' || echo './'`mast-util.c
462. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c alignment.c -o libcommon_la-alignment.o >/dev/null 2>&1
463. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c linked-list.c -o libcommon_la-linked-list.o >/dev/null 2>&1
464. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c array.c -o libcommon_la-array.o >/dev/null 2>&1
465. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-match.lo `test -f 'match.c' || echo './'`match.c
466. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-matrix.lo `test -f 'matrix.c' || echo './'`matrix.c
467. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mast-util.c -fPIC -DPIC -o .libs/libcommon_la-mast-util.o
468. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-mcast_match.lo `test -f 'mcast_match.c' || echo './'`mcast_match.c
469. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c karlin.c -o libcommon_la-karlin.o >/dev/null 2>&1
470. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c log-hmm.c -o libcommon_la-log-hmm.o >/dev/null 2>&1
471. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-meme-sax.lo `test -f 'meme-sax.c' || echo './'`meme-sax.c
472. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c matrix.c -fPIC -DPIC -o .libs/libcommon_la-matrix.o
473. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c match.c -fPIC -DPIC -o .libs/libcommon_la-match.o
474. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mcast_match.c -fPIC -DPIC -o .libs/libcommon_la-mcast_match.o
475. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-metameme.lo `test -f 'metameme.c' || echo './'`metameme.c
476. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-mhmm.lo `test -f 'mhmm.c' || echo './'`mhmm.c
477. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c build-hmm.c -o libcommon_la-build-hmm.o >/dev/null 2>&1
478. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c meme-sax.c -fPIC -DPIC -o .libs/libcommon_la-meme-sax.o
479. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-mhmms.lo `test -f 'mhmms.c' || echo './'`mhmms.c
480. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mhmm.c -fPIC -DPIC -o .libs/libcommon_la-mhmm.o
481. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c metameme.c -fPIC -DPIC -o .libs/libcommon_la-metameme.o
482. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mhmms.c -fPIC -DPIC -o .libs/libcommon_la-mhmms.o
483. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-mhmmscan.lo `test -f 'mhmmscan.c' || echo './'`mhmmscan.c
484. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c html-data.c -o libcommon_la-html-data.o >/dev/null 2>&1
485. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c fitevd.c -o libcommon_la-fitevd.o >/dev/null 2>&1
486. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mhmmscan.c -fPIC -DPIC -o .libs/libcommon_la-mhmmscan.o
487. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c metameme.c -o libcommon_la-metameme.o >/dev/null 2>&1
488. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-mhmm-state.lo `test -f 'mhmm-state.c' || echo './'`mhmm-state.c
489. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motif-in.lo `test -f 'motif-in.c' || echo './'`motif-in.c
490. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motif-in-common.lo `test -f 'motif-in-common.c' || echo './'`motif-in-common.c
491. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motif-in-dreme-xml.lo `test -f 'motif-in-dreme-xml.c' || echo './'`motif-in-dreme-xml.c
492. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mhmm-state.c -fPIC -DPIC -o .libs/libcommon_la-mhmm-state.o
493. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c match.c -o libcommon_la-match.o >/dev/null 2>&1
494. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in.c -fPIC -DPIC -o .libs/libcommon_la-motif-in.o
495. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-common.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-common.o
496. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-dreme-xml.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-dreme-xml.o
497. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motif-in-meme-html.lo `test -f 'motif-in-meme-html.c' || echo './'`motif-in-meme-html.c
498. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-common.c -o libcommon_la-motif-in-common.o >/dev/null 2>&1
499. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mcast_match.c -o libcommon_la-mcast_match.o >/dev/null 2>&1
500. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-meme-html.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-html.o
501. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motif-in-meme-text.lo `test -f 'motif-in-meme-text.c' || echo './'`motif-in-meme-text.c
502. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c ceqlogo.c -o libcommon_la-ceqlogo.o >/dev/null 2>&1
503. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motif-in-meme-xml.lo `test -f 'motif-in-meme-xml.c' || echo './'`motif-in-meme-xml.c
504. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-meme-text.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-text.o
505. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motif.lo `test -f 'motif.c' || echo './'`motif.c
506. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-meme-xml.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-xml.o
507. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motif_regexp.lo `test -f 'motif_regexp.c' || echo './'`motif_regexp.c
508. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif.c -fPIC -DPIC -o .libs/libcommon_la-motif.o
509. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mhmm.c -o libcommon_la-mhmm.o >/dev/null 2>&1
510. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif_regexp.c -fPIC -DPIC -o .libs/libcommon_la-motif_regexp.o
511. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mhmm-state.c -o libcommon_la-mhmm-state.o >/dev/null 2>&1
512. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motifs.lo `test -f 'motifs.c' || echo './'`motifs.c
513. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-motiph-scoring.lo `test -f 'motiph-scoring.c' || echo './'`motiph-scoring.c
514. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-dreme-xml.c -o libcommon_la-motif-in-dreme-xml.o >/dev/null 2>&1
515. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motifs.c -fPIC -DPIC -o .libs/libcommon_la-motifs.o
516. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-object-list.lo `test -f 'object-list.c' || echo './'`object-list.c
517. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motiph-scoring.c -fPIC -DPIC -o .libs/libcommon_la-motiph-scoring.o
518. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c logodds.c -o libcommon_la-logodds.o >/dev/null 2>&1
519. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c object-list.c -fPIC -DPIC -o .libs/libcommon_la-object-list.o
520. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mast-util.c -o libcommon_la-mast-util.o >/dev/null 2>&1
521. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-order.lo `test -f 'order.c' || echo './'`order.c
522. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-data-block.lo `test -f 'data-block.c' || echo './'`data-block.c
523. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in.c -o libcommon_la-motif-in.o >/dev/null 2>&1
524. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c order.c -fPIC -DPIC -o .libs/libcommon_la-order.o
525. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mhmmscan.c -o libcommon_la-mhmmscan.o >/dev/null 2>&1
526. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c data-block.c -fPIC -DPIC -o .libs/libcommon_la-data-block.o
527. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c matrix.c -o libcommon_la-matrix.o >/dev/null 2>&1
528. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif_regexp.c -o libcommon_la-motif_regexp.o >/dev/null 2>&1
529. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motifs.c -o libcommon_la-motifs.o >/dev/null 2>&1
530. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-data-block-reader.lo `test -f 'data-block-reader.c' || echo './'`data-block-reader.c
531. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c cisml.c -o libcommon_la-cisml.o >/dev/null 2>&1
532. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c object-list.c -o libcommon_la-object-list.o >/dev/null 2>&1
533. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-prior-reader-from-psp.lo `test -f 'prior-reader-from-psp.c' || echo './'`prior-reader-from-psp.c
534. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c data-block.c -o libcommon_la-data-block.o >/dev/null 2>&1
535. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c data-block-reader.c -fPIC -DPIC -o .libs/libcommon_la-data-block-reader.o
536. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-prior-dist.lo `test -f 'prior-dist.c' || echo './'`prior-dist.c
537. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c prior-reader-from-psp.c -fPIC -DPIC -o .libs/libcommon_la-prior-reader-from-psp.o
538. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c prior-dist.c -fPIC -DPIC -o .libs/libcommon_la-prior-dist.o
539. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-pssm.lo `test -f 'pssm.c' || echo './'`pssm.c
540. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-meme-xml.c -o libcommon_la-motif-in-meme-xml.o >/dev/null 2>&1
541. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-meme-html.c -o libcommon_la-motif-in-meme-html.o >/dev/null 2>&1
542. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-pssm-distr.lo `test -f 'pssm-distr.c' || echo './'`pssm-distr.c
543. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c data-block-reader.c -o libcommon_la-data-block-reader.o >/dev/null 2>&1
544. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-qvalue.lo `test -f 'qvalue.c' || echo './'`qvalue.c
545. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-ranksum_test.lo `test -f 'ranksum_test.c' || echo './'`ranksum_test.c
546. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c pssm.c -fPIC -DPIC -o .libs/libcommon_la-pssm.o
547. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c order.c -o libcommon_la-order.o >/dev/null 2>&1
548. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-rdb-matrix.lo `test -f 'rdb-matrix.c' || echo './'`rdb-matrix.c
549. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-read-mhmm.lo `test -f 'read-mhmm.c' || echo './'`read-mhmm.c
550. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c mhmms.c -o libcommon_la-mhmms.o >/dev/null 2>&1
551. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c pssm-distr.c -fPIC -DPIC -o .libs/libcommon_la-pssm-distr.o
552. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c qvalue.c -fPIC -DPIC -o .libs/libcommon_la-qvalue.o
553. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c ranksum_test.c -fPIC -DPIC -o .libs/libcommon_la-ranksum_test.o
554. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif.c -o libcommon_la-motif.o >/dev/null 2>&1
555. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c prior-dist.c -o libcommon_la-prior-dist.o >/dev/null 2>&1
556. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c rdb-matrix.c -fPIC -DPIC -o .libs/libcommon_la-rdb-matrix.o
557. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c meme-sax.c -o libcommon_la-meme-sax.o >/dev/null 2>&1
558. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c read-mhmm.c -fPIC -DPIC -o .libs/libcommon_la-read-mhmm.o
559. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-read_sequence.lo `test -f 'read_sequence.c' || echo './'`read_sequence.c
560. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-red-black-tree.lo `test -f 'red-black-tree.c' || echo './'`red-black-tree.c
561. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c prior-reader-from-psp.c -o libcommon_la-prior-reader-from-psp.o >/dev/null 2>&1
562. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c read_sequence.c -fPIC -DPIC -o .libs/libcommon_la-read_sequence.o
563. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c red-black-tree.c -fPIC -DPIC -o .libs/libcommon_la-red-black-tree.o
564. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-regex-utils.lo `test -f 'regex-utils.c' || echo './'`regex-utils.c
565. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c pssm-distr.c -o libcommon_la-pssm-distr.o >/dev/null 2>&1
566. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motif-in-meme-text.c -o libcommon_la-motif-in-meme-text.o >/dev/null 2>&1
567. read-mhmm.c: In function 'read_mhmm':
568. read-mhmm.c:735:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
569. read-mhmm.c: In function 'read_mhmm_state':
570. read-mhmm.c:75:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
571. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c regex-utils.c -fPIC -DPIC -o .libs/libcommon_la-regex-utils.o
572. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c motiph-scoring.c -o libcommon_la-motiph-scoring.o >/dev/null 2>&1
573. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-regress.lo `test -f 'regress.c' || echo './'`regress.c
574. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-reservoir.lo `test -f 'reservoir.c' || echo './'`reservoir.c
575. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c regress.c -fPIC -DPIC -o .libs/libcommon_la-regress.o
576. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c ranksum_test.c -o libcommon_la-ranksum_test.o >/dev/null 2>&1
577. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c qvalue.c -o libcommon_la-qvalue.o >/dev/null 2>&1
578. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c reservoir.c -fPIC -DPIC -o .libs/libcommon_la-reservoir.o
579. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-sax-parser-utils.lo `test -f 'sax-parser-utils.c' || echo './'`sax-parser-utils.c
580. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c rdb-matrix.c -o libcommon_la-rdb-matrix.o >/dev/null 2>&1
581. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-scanned-sequence.lo `test -f 'scanned-sequence.c' || echo './'`scanned-sequence.c
582. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-scored-sites.lo `test -f 'scored-sites.c' || echo './'`scored-sites.c
583. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c sax-parser-utils.c -fPIC -DPIC -o .libs/libcommon_la-sax-parser-utils.o
584. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c regress.c -o libcommon_la-regress.o >/dev/null 2>&1
585. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c regex-utils.c -o libcommon_la-regex-utils.o >/dev/null 2>&1
586. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c scanned-sequence.c -fPIC -DPIC -o .libs/libcommon_la-scanned-sequence.o
587. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c scored-sites.c -fPIC -DPIC -o .libs/libcommon_la-scored-sites.o
588. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-seq.lo `test -f 'seq.c' || echo './'`seq.c
589. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c read_sequence.c -o libcommon_la-read_sequence.o >/dev/null 2>&1
590. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-seq-reader-from-fasta.lo `test -f 'seq-reader-from-fasta.c' || echo './'`seq-reader-from-fasta.c
591. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-simple-getopt.lo `test -f 'simple-getopt.c' || echo './'`simple-getopt.c
592. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c seq.c -fPIC -DPIC -o .libs/libcommon_la-seq.o
593. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c reservoir.c -o libcommon_la-reservoir.o >/dev/null 2>&1
594. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-spearman-rank-correlation.lo `test -f 'spearman-rank-correlation.c' || echo './'`spearman-rank-correlation.c
595. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c seq-reader-from-fasta.c -fPIC -DPIC -o .libs/libcommon_la-seq-reader-from-fasta.o
596. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c simple-getopt.c -fPIC -DPIC -o .libs/libcommon_la-simple-getopt.o
597. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-string-builder.lo `test -f 'string-builder.c' || echo './'`string-builder.c
598. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-string-list.lo `test -f 'string-list.c' || echo './'`string-list.c
599. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c scanned-sequence.c -o libcommon_la-scanned-sequence.o >/dev/null 2>&1
600. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c spearman-rank-correlation.c -fPIC -DPIC -o .libs/libcommon_la-spearman-rank-correlation.o
601. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c string-builder.c -fPIC -DPIC -o .libs/libcommon_la-string-builder.o
602. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c string-list.c -fPIC -DPIC -o .libs/libcommon_la-string-list.o
603. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c read-mhmm.c -o libcommon_la-read-mhmm.o >/dev/null 2>&1
604. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-string-match.lo `test -f 'string-match.c' || echo './'`string-match.c
605. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-subst-matrix.lo `test -f 'subst-matrix.c' || echo './'`subst-matrix.c
606. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-substmatrix-table.lo `test -f 'substmatrix-table.c' || echo './'`substmatrix-table.c
607. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c string-match.c -fPIC -DPIC -o .libs/libcommon_la-string-match.o
608. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c simple-getopt.c -o libcommon_la-simple-getopt.o >/dev/null 2>&1
609. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c sax-parser-utils.c -o libcommon_la-sax-parser-utils.o >/dev/null 2>&1
610. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-transfac.lo `test -f 'transfac.c' || echo './'`transfac.c
611. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-tree.lo `test -f 'tree.c' || echo './'`tree.c
612. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-utils.lo `test -f 'utils.c' || echo './'`utils.c
613. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c subst-matrix.c -fPIC -DPIC -o .libs/libcommon_la-subst-matrix.o
614. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c red-black-tree.c -o libcommon_la-red-black-tree.o >/dev/null 2>&1
615. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c substmatrix-table.c -fPIC -DPIC -o .libs/libcommon_la-substmatrix-table.o
616. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c transfac.c -fPIC -DPIC -o .libs/libcommon_la-transfac.o
617. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c scored-sites.c -o libcommon_la-scored-sites.o >/dev/null 2>&1
618. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c tree.c -fPIC -DPIC -o .libs/libcommon_la-tree.o
619. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-write-mhmm.lo `test -f 'write-mhmm.c' || echo './'`write-mhmm.c
620. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c utils.c -fPIC -DPIC -o .libs/libcommon_la-utils.o
621. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c spearman-rank-correlation.c -o libcommon_la-spearman-rank-correlation.o >/dev/null 2>&1
622. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-xml-out.lo `test -f 'xml-out.c' || echo './'`xml-out.c
623. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c pssm.c -o libcommon_la-pssm.o >/dev/null 2>&1
624. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c write-mhmm.c -fPIC -DPIC -o .libs/libcommon_la-write-mhmm.o
625. /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o libcommon_la-xml-util.lo `test -f 'xml-util.c' || echo './'`xml-util.c
626. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c xml-out.c -fPIC -DPIC -o .libs/libcommon_la-xml-out.o
627. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c seq-reader-from-fasta.c -o libcommon_la-seq-reader-from-fasta.o >/dev/null 2>&1
628. tree.c: In function 'read_tree':
629. tree.c:571:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
630. tree.c: In function 'read_node':
631. tree.c:509:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
632. tree.c:540:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
633. utils.c: In function 'date_and_time':
634. utils.c:712:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
635. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c xml-util.c -fPIC -DPIC -o .libs/libcommon_la-xml-util.o
636. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c string-builder.c -o libcommon_la-string-builder.o >/dev/null 2>&1
637. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o alphtype-alphtype.o `test -f 'alphtype.c' || echo './'`alphtype.c
638. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c xml-out.c -o libcommon_la-xml-out.o >/dev/null 2>&1
639. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o ama-ama.o `test -f 'ama.c' || echo './'`ama.c
640. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c substmatrix-table.c -o libcommon_la-substmatrix-table.o >/dev/null 2>&1
641. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o ama-ama_scan.o `test -f 'ama_scan.c' || echo './'`ama_scan.c
642. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o ame-ame.o `test -f 'ame.c' || echo './'`ame.c
643. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c string-match.c -o libcommon_la-string-match.o >/dev/null 2>&1
644. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c subst-matrix.c -o libcommon_la-subst-matrix.o >/dev/null 2>&1
645. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c seq.c -o libcommon_la-seq.o >/dev/null 2>&1
646. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o ame-ramen_scan.o `test -f 'ramen_scan.c' || echo './'`ramen_scan.c
647. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o beadstring-beadstring.o `test -f 'beadstring.c' || echo './'`beadstring.c
648. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DCL_MAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o ceqlogo-ceqlogo.o `test -f 'ceqlogo.c' || echo './'`ceqlogo.c
649. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o centrimo-centrimo.o `test -f 'centrimo.c' || echo './'`centrimo.c
650. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c string-list.c -o libcommon_la-string-list.o >/dev/null 2>&1
651. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o centrimo-html-monolith.o `test -f 'html-monolith.c' || echo './'`html-monolith.c
652. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c transfac.c -o libcommon_la-transfac.o >/dev/null 2>&1
653. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c write-mhmm.c -o libcommon_la-write-mhmm.o >/dev/null 2>&1
654. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c xml-util.c -o libcommon_la-xml-util.o >/dev/null 2>&1
655. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o centrimo-json-writer.o `test -f 'json-writer.c' || echo './'`json-writer.c
656. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o clustalw_io-clustalw-io.o `test -f 'clustalw-io.c' || echo './'`clustalw-io.c
657. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o clustalw2fasta-clustalw2fasta.o `test -f 'clustalw2fasta.c' || echo './'`clustalw2fasta.c
658. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o clustalw2phylip-clustalw2phylip.o `test -f 'clustalw2phylip.c' || echo './'`clustalw2phylip.c
659. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o compute_prior_dist-compute-prior-dist.o `test -f 'compute-prior-dist.c' || echo './'`compute-prior-dist.c
660. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o compute_uniform_priors-compute-uniform-priors.o `test -f 'compute-uniform-priors.c' || echo './'`compute-uniform-priors.c
661. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c utils.c -o libcommon_la-utils.o >/dev/null 2>&1
662. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o draw_mhmm-draw-mhmm.o `test -f 'draw-mhmm.c' || echo './'`draw-mhmm.c
663. libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c tree.c -o libcommon_la-tree.o >/dev/null 2>&1
664. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o draw_mhmm-read-mhmm.o `test -f 'read-mhmm.c' || echo './'`read-mhmm.c
665. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o fasta_io-fasta-io.o `test -f 'fasta-io.c' || echo './'`fasta-io.c
666. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o fimo-fimo.o `test -f 'fimo.c' || echo './'`fimo.c
667. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o fitevd-fitevd.o `test -f 'fitevd.c' || echo './'`fitevd.c
668. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o gendb-gendb.o `test -f 'gendb.c' || echo './'`gendb.c
669. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c getsize.c
670. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c
671. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_args.o `test -f 'glam2_args.c' || echo './'`glam2_args.c
672. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_column_sample.o `test -f 'glam2_column_sample.c' || echo './'`glam2_column_sample.c
673. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c
674. read-mhmm.c: In function 'read_mhmm':
675. read-mhmm.c:735:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
676. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c
677. read-mhmm.c: In function 'read_mhmm_state':
678. read-mhmm.c:75:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
679. glam2_alphabet.c: In function 'alphabet_read':
680. glam2_alphabet.c:66:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
681. glam2_alphabet.c:77:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
682. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c
683. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_glam2.o `test -f 'glam2_glam2.c' || echo './'`glam2_glam2.c
684. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_glam2_aln.o `test -f 'glam2_glam2_aln.c' || echo './'`glam2_glam2_aln.c
685. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_init.o `test -f 'glam2_init.c' || echo './'`glam2_init.c
686. glam2_dirichlet.c: In function 'dmix_read':
687. glam2_dirichlet.c:282:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
688. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_output.o `test -f 'glam2_output.c' || echo './'`glam2_output.c
689. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c
690. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_site_sample.o `test -f 'glam2_site_sample.c' || echo './'`glam2_site_sample.c
691. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c
692. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2format-glam2_glam2format.o `test -f 'glam2_glam2format.c' || echo './'`glam2_glam2format.c
693. glam2_glam2.c: In function 'main':
694. glam2_glam2.c:196:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
695. glam2_glam2.c:199:9: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
696. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2format-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c
697. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2format-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c
698. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2format-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c
699. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2mask-glam2_glam2mask.o `test -f 'glam2_glam2mask.c' || echo './'`glam2_glam2mask.c
700. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2mask-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c
701. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2mask-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c
702. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2mask-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c
703. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_alignment.o `test -f 'glam2_alignment.c' || echo './'`glam2_alignment.c
704. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_alphabet.o `test -f 'glam2_alphabet.c' || echo './'`glam2_alphabet.c
705. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_dna_prior.o `test -f 'glam2_dna_prior.c' || echo './'`glam2_dna_prior.c
706. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_fasta.o `test -f 'glam2_fasta.c' || echo './'`glam2_fasta.c
707. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_dirichlet.o `test -f 'glam2_dirichlet.c' || echo './'`glam2_dirichlet.c
708. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_heap.o `test -f 'glam2_heap.c' || echo './'`glam2_heap.c
709. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_motif.o `test -f 'glam2_motif.c' || echo './'`glam2_motif.c
710. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_scan.o `test -f 'glam2_scan.c' || echo './'`glam2_scan.c
711. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_scan_args.o `test -f 'glam2_scan_args.c' || echo './'`glam2_scan_args.c
712. glam2_alphabet.c: In function 'alphabet_read':
713. glam2_alphabet.c:66:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
714. glam2_alphabet.c:77:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
715. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_scan_init.o `test -f 'glam2_scan_init.c' || echo './'`glam2_scan_init.c
716. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_scan_output.o `test -f 'glam2_scan_output.c' || echo './'`glam2_scan_output.c
717. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_recode3_20comp.o `test -f 'glam2_recode3_20comp.c' || echo './'`glam2_recode3_20comp.c
718. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o glam2scan-glam2_util.o `test -f 'glam2_util.c' || echo './'`glam2_util.c
719. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o gomo-gomo.o `test -f 'gomo.c' || echo './'`gomo.c
720. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o gomo-gomo_highlight.o `test -f 'gomo_highlight.c' || echo './'`gomo_highlight.c
721. glam2_dirichlet.c: In function 'dmix_read':
722. glam2_dirichlet.c:282:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
723. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o gomo-merger.o `test -f 'merger.c' || echo './'`merger.c
724. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o gomo-ranksum_test.o `test -f 'ranksum_test.c' || echo './'`ranksum_test.c
725. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o gomo-read_csv.o `test -f 'read_csv.c' || echo './'`read_csv.c
726. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o gomo_highlight-gomo_highlight.o `test -f 'gomo_highlight.c' || echo './'`gomo_highlight.c
727. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o llr-llr.o `test -f 'llr.c' || echo './'`llr.c
728. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o llr-logs.o `test -f 'logs.c' || echo './'`logs.c
729. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o log_hmm-log-hmm.o `test -f 'log-hmm.c' || echo './'`log-hmm.c
730. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o mast-diagram.o `test -f 'diagram.c' || echo './'`diagram.c
731. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o mast-mast.o `test -f 'mast.c' || echo './'`mast.c
732. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o mast2txt-mast2txt.o `test -f 'mast2txt.c' || echo './'`mast2txt.c
733. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o mcast-mcast.o `test -f 'mcast.c' || echo './'`mcast.c
734. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-banner.o `test -f 'banner.c' || echo './'`banner.c
735. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-branching_search.o `test -f 'branching_search.c' || echo './'`branching_search.c
736. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-calculate_p_y.o `test -f 'calculate_p_y.c' || echo './'`calculate_p_y.c
737. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-discretize.o `test -f 'discretize.c' || echo './'`discretize.c
738. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-display.o `test -f 'display.c' || echo './'`display.c
739. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-dpalign.o `test -f 'dpalign.c' || echo './'`dpalign.c
740. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-em.o `test -f 'em.c' || echo './'`em.c
741. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-init.o `test -f 'init.c' || echo './'`init.c
742. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-justlike.o `test -f 'justlike.c' || echo './'`justlike.c
743. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-likelihood.o `test -f 'likelihood.c' || echo './'`likelihood.c
744. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-llr.o `test -f 'llr.c' || echo './'`llr.c
745. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-logs.o `test -f 'logs.c' || echo './'`logs.c
746. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-meme.o `test -f 'meme.c' || echo './'`meme.c
747. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-meme-print-html.o `test -f 'meme-print-html.c' || echo './'`meme-print-html.c
748. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-meme_util.o `test -f 'meme_util.c' || echo './'`meme_util.c
749. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-message.o `test -f 'message.c' || echo './'`message.c
750. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-mp.o `test -f 'mp.c' || echo './'`mp.c
751. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-oops.o `test -f 'oops.c' || echo './'`oops.c
752. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-partition.o `test -f 'partition.c' || echo './'`partition.c
753. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-prior.o `test -f 'prior.c' || echo './'`prior.c
754. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-psp.o `test -f 'psp.c' || echo './'`psp.c
755. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-read_seq_file.o `test -f 'read_seq_file.c' || echo './'`read_seq_file.c
756. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-seed.o `test -f 'seed.c' || echo './'`seed.c
757. meme.c: In function 'main':
758. meme.c:180:35: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
759. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-seed_diffs.o `test -f 'seed_diffs.c' || echo './'`seed_diffs.c
760. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-seq2theta.o `test -f 'seq2theta.c' || echo './'`seq2theta.c
761. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-sp_matrix.o `test -f 'sp_matrix.c' || echo './'`sp_matrix.c
762. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-starts.o `test -f 'starts.c' || echo './'`starts.c
763. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-subseq7.o `test -f 'subseq7.c' || echo './'`subseq7.c
764. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-tcm.o `test -f 'tcm.c' || echo './'`tcm.c
765. prior.c:284:1: warning: variably modified 'lgam_array1' at file scope [enabled by default]
766. prior.c:285:1: warning: variably modified 'lgam_array2' at file scope [enabled by default]
767. prior.c: In function 'read_PriorLib':
768. prior.c:82:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
769. prior.c:92:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
770. prior.c:121:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
771. prior.c:124:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
772. prior.c:125:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
773. prior.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
774. prior.c:130:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
775. prior.c:135:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
776. prior.c:137:23: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
777. prior.c:142:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
778. prior.c:143:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
779. prior.c:146:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
780. prior.c:147:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
781. prior.c:150:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
782. prior.c:156:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
783. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_bin-verbosity.o `test -f 'verbosity.c' || echo './'`verbosity.c
784. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_xml_html-meme-xml-html.o `test -f 'meme-xml-html.c' || echo './'`meme-xml-html.c
785. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme_xml_html-meme-print-html.o `test -f 'meme-print-html.c' || echo './'`meme-print-html.c
786. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o meme2images-meme2images.o `test -f 'meme2images.c' || echo './'`meme2images.c
787. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o mhmm-mhmm.o `test -f 'mhmm.c' || echo './'`mhmm.c
788. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o mhmm_io-mhmm-io.o `test -f 'mhmm-io.c' || echo './'`mhmm-io.c
789. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o mhmme-mhmme.o `test -f 'mhmme.c' || echo './'`mhmme.c
790. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o mhmms-mhmms.o `test -f 'mhmms.c' || echo './'`mhmms.c
791. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o mhmmscan-mhmmscan.o `test -f 'mhmmscan.c' || echo './'`mhmmscan.c
792. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o motiph-motiph.o `test -f 'motiph.c' || echo './'`motiph.c
793. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMOTIPH -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o pmp_bf-pmp_bf.o `test -f 'pmp_bf.c' || echo './'`pmp_bf.c
794. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o ramen-ramen.o `test -f 'ramen.c' || echo './'`ramen.c
795. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o ramen-ramen_scan.o `test -f 'ramen_scan.c' || echo './'`ramen_scan.c
796. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o readseq-readseq.o `test -f 'readseq.c' || echo './'`readseq.c
797. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o readseq-ureadseq.o `test -f 'ureadseq.c' || echo './'`ureadseq.c
798. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DSHADOW -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o shadow-shadow.o `test -f 'shadow.c' || echo './'`shadow.c
799. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o spamo-cisml-sax.o `test -f 'cisml-sax.c' || echo './'`cisml-sax.c
800. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o spamo-spamo.o `test -f 'spamo.c' || echo './'`spamo.c
801. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o spamo-spamo-cisml.o `test -f 'spamo-cisml.c' || echo './'`spamo-cisml.c
802. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o spamo-spamo-matches.o `test -f 'spamo-matches.c' || echo './'`spamo-matches.c
803. readseq.c: In function 'main':
804. readseq.c:774:43: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
805. readseq.c:788:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
806. readseq.c:853:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
807. readseq.c:899:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
808. readseq.c:925:20: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result]
809. readseq.c: In function 'chooseFormat':
810. readseq.c:424:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
811. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o spamo-spamo-output.o `test -f 'spamo-output.c' || echo './'`spamo-output.c
812. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o spamo-spamo-scan.o `test -f 'spamo-scan.c' || echo './'`spamo-scan.c
813. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o tomtom-tomtom.o `test -f 'tomtom.c' || echo './'`tomtom.c
814. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o tree-tree.o `test -f 'tree.c' || echo './'`tree.c
815. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o qvalue-qvalue.o `test -f 'qvalue.c' || echo './'`qvalue.c
816. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o ranksum_test-ranksum_test.o `test -f 'ranksum_test.c' || echo './'`ranksum_test.c
817. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o reconcile_tree_alignment-reconcile-tree-alignment.o `test -f 'reconcile-tree-alignment.c' || echo './'`reconcile-tree-alignment.c
818. tree.c: In function 'read_tree':
819. tree.c:571:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
820. tree.c: In function 'read_node':
821. tree.c:509:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
822. tree.c:540:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
823. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o reduce_alignment-reduce-alignment.o `test -f 'reduce-alignment.c' || echo './'`reduce-alignment.c
824. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o remove_alignment_gaps-remove-alignment-gaps.o `test -f 'remove-alignment-gaps.c' || echo './'`remove-alignment-gaps.c
825. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -c -o xsltproc_lite-xsltproc_lite.o `test -f 'xsltproc_lite.c' || echo './'`xsltproc_lite.c
826. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o libcommon.la libcommon_la-alignment.lo libcommon_la-alphabet.lo libcommon_la-array.lo libcommon_la-array-list.lo libcommon_la-background.lo libcommon_la-binary-search.lo libcommon_la-binomial.lo libcommon_la-build-hmm.lo libcommon_la-buffer.lo libcommon_la-ceqlogo.lo libcommon_la-cisml.lo libcommon_la-clustalw-io.lo libcommon_la-dp.lo libcommon_la-dreme-sax.lo libcommon_la-eps2png.lo libcommon_la-empirical-qvalue.lo libcommon_la-evomodel.lo libcommon_la-evomodel_with_loss.lo libcommon_la-fasta-io.lo libcommon_la-fisher_exact.lo libcommon_la-fitevd.lo libcommon_la-gendb.lo libcommon_la-hash_alph.lo libcommon_la-hash_table.lo libcommon_la-heap.lo libcommon_la-html-data.lo libcommon_la-io.lo libcommon_la-karlin.lo libcommon_la-linked-list.lo libcommon_la-log-hmm.lo libcommon_la-logodds.lo libcommon_la-mast-util.lo libcommon_la-match.lo libcommon_la-matrix.lo libcommon_la-mcast_match.lo libcommon_la-meme-sax.lo libcommon_la-metameme.lo libcommon_la-mhmm.lo libcommon_la-mhmms.lo libcommon_la-mhmmscan.lo libcommon_la-mhmm-state.lo libcommon_la-motif-in.lo libcommon_la-motif-in-common.lo libcommon_la-motif-in-dreme-xml.lo libcommon_la-motif-in-meme-html.lo libcommon_la-motif-in-meme-text.lo libcommon_la-motif-in-meme-xml.lo libcommon_la-motif.lo libcommon_la-motif_regexp.lo libcommon_la-motifs.lo libcommon_la-motiph-scoring.lo libcommon_la-object-list.lo libcommon_la-order.lo libcommon_la-data-block.lo libcommon_la-data-block-reader.lo libcommon_la-prior-reader-from-psp.lo libcommon_la-prior-dist.lo libcommon_la-pssm.lo libcommon_la-pssm-distr.lo libcommon_la-qvalue.lo libcommon_la-ranksum_test.lo libcommon_la-rdb-matrix.lo libcommon_la-read-mhmm.lo libcommon_la-read_sequence.lo libcommon_la-red-black-tree.lo libcommon_la-regex-utils.lo libcommon_la-regress.lo libcommon_la-reservoir.lo libcommon_la-sax-parser-utils.lo libcommon_la-scanned-sequence.lo libcommon_la-scored-sites.lo libcommon_la-seq.lo libcommon_la-seq-reader-from-fasta.lo libcommon_la-simple-getopt.lo libcommon_la-spearman-rank-correlation.lo libcommon_la-string-builder.lo libcommon_la-string-list.lo libcommon_la-string-match.lo libcommon_la-subst-matrix.lo libcommon_la-substmatrix-table.lo libcommon_la-transfac.lo libcommon_la-tree.lo libcommon_la-utils.lo libcommon_la-write-mhmm.lo libcommon_la-xml-out.lo libcommon_la-xml-util.lo -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lm -lmpi -lexslt -lxslt -lxml2 -lm
827. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o meme-xml-html meme_xml_html-meme-xml-html.o meme_xml_html-meme-print-html.o -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lm -lmpi -lexslt -lxslt -lxml2 -lm
828. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o xsltproc_lite xsltproc_lite-xsltproc_lite.o -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lm -lmpi -lexslt -lxslt -lxml2 -lm
829. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o meme-xml-html meme_xml_html-meme-xml-html.o meme_xml_html-meme-print-html.o -Wl,--as-needed -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
830. libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libcommon.a .libs/libcommon_la-alignment.o .libs/libcommon_la-alphabet.o .libs/libcommon_la-array.o .libs/libcommon_la-array-list.o .libs/libcommon_la-background.o .libs/libcommon_la-binary-search.o .libs/libcommon_la-binomial.o .libs/libcommon_la-build-hmm.o .libs/libcommon_la-buffer.o .libs/libcommon_la-ceqlogo.o .libs/libcommon_la-cisml.o .libs/libcommon_la-clustalw-io.o .libs/libcommon_la-dp.o .libs/libcommon_la-dreme-sax.o .libs/libcommon_la-eps2png.o .libs/libcommon_la-empirical-qvalue.o .libs/libcommon_la-evomodel.o .libs/libcommon_la-evomodel_with_loss.o .libs/libcommon_la-fasta-io.o .libs/libcommon_la-fisher_exact.o .libs/libcommon_la-fitevd.o .libs/libcommon_la-gendb.o .libs/libcommon_la-hash_alph.o .libs/libcommon_la-hash_table.o .libs/libcommon_la-heap.o .libs/libcommon_la-html-data.o .libs/libcommon_la-io.o .libs/libcommon_la-karlin.o .libs/libcommon_la-linked-list.o .libs/libcommon_la-log-hmm.o .libs/libcommon_la-logodds.o .libs/libcommon_la-mast-util.o .libs/libcommon_la-match.o .libs/libcommon_la-matrix.o .libs/libcommon_la-mcast_match.o .libs/libcommon_la-meme-sax.o .libs/libcommon_la-metameme.o .libs/libcommon_la-mhmm.o .libs/libcommon_la-mhmms.o .libs/libcommon_la-mhmmscan.o .libs/libcommon_la-mhmm-state.o .libs/libcommon_la-motif-in.o .libs/libcommon_la-motif-in-common.o .libs/libcommon_la-motif-in-dreme-xml.o .libs/libcommon_la-motif-in-meme-html.o .libs/libcommon_la-motif-in-meme-text.o .libs/libcommon_la-motif-in-meme-xml.o .libs/libcommon_la-motif.o .libs/libcommon_la-motif_regexp.o .libs/libcommon_la-motifs.o .libs/libcommon_la-motiph-scoring.o .libs/libcommon_la-object-list.o .libs/libcommon_la-order.o .libs/libcommon_la-data-block.o .libs/libcommon_la-data-block-reader.o .libs/libcommon_la-prior-reader-from-psp.o .libs/libcommon_la-prior-dist.o .libs/libcommon_la-pssm.o .libs/libcommon_la-pssm-distr.o .libs/libcommon_la-qvalue.o .libs/libcommon_la-ranksum_test.o .libs/libcommon_la-rdb-matrix.o .libs/libcommon_la-read-mhmm.o .libs/libcommon_la-read_sequence.o .libs/libcommon_la-red-black-tree.o .libs/libcommon_la-regex-utils.o .libs/libcommon_la-regress.o .libs/libcommon_la-reservoir.o .libs/libcommon_la-sax-parser-utils.o .libs/libcommon_la-scanned-sequence.o .libs/libcommon_la-scored-sites.o .libs/libcommon_la-seq.o .libs/libcommon_la-seq-reader-from-fasta.o .libs/libcommon_la-simple-getopt.o .libs/libcommon_la-spearman-rank-correlation.o .libs/libcommon_la-string-builder.o .libs/libcommon_la-string-list.o .libs/libcommon_la-string-match.o .libs/libcommon_la-subst-matrix.o .libs/libcommon_la-substmatrix-table.o .libs/libcommon_la-transfac.o .libs/libcommon_la-tree.o .libs/libcommon_la-utils.o .libs/libcommon_la-write-mhmm.o .libs/libcommon_la-xml-out.o .libs/libcommon_la-xml-util.o
831. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o xsltproc_lite xsltproc_lite-xsltproc_lite.o -Wl,--as-needed -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
832. libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libcommon.a
833. libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../libcommon.la" "libcommon.la" )
834. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o alphtype alphtype-alphtype.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
835. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o ama ama-ama.o ama-ama_scan.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
836. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o ame ame-ame.o ame-ramen_scan.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lm -lmpi -lexslt -lxslt -lxml2 -lm
837. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o beadstring beadstring-beadstring.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
838. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DCL_MAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o ceqlogo ceqlogo-ceqlogo.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
839. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o centrimo centrimo-centrimo.o centrimo-html-monolith.o centrimo-json-writer.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
840. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o clustalw-io clustalw_io-clustalw-io.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
841. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o clustalw2fasta clustalw2fasta-clustalw2fasta.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
842. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o clustalw2phylip clustalw2phylip-clustalw2phylip.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
843. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o compute-prior-dist compute_prior_dist-compute-prior-dist.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
844. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o compute-uniform-priors compute_uniform_priors-compute-uniform-priors.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
845. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o draw-mhmm draw_mhmm-draw-mhmm.o draw_mhmm-read-mhmm.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
846. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o fasta-io fasta_io-fasta-io.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
847. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o fimo fimo-fimo.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
848. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o fitevd fitevd-fitevd.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
849. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o gendb gendb-gendb.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
850. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o getsize getsize.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
851. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
852. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
853. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o glam2mask glam2mask-glam2_glam2mask.o glam2mask-glam2_alignment.o glam2mask-glam2_fasta.o glam2mask-glam2_util.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
854. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o alphtype alphtype-alphtype.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
855. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o fitevd fitevd-fitevd.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
856. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
857. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o ama ama-ama.o ama-ama_scan.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
858. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o clustalw-io clustalw_io-clustalw-io.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
859. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o clustalw2fasta clustalw2fasta-clustalw2fasta.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
860. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o compute-uniform-priors compute_uniform_priors-compute-uniform-priors.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
861. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o beadstring beadstring-beadstring.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
862. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o compute-prior-dist compute_prior_dist-compute-prior-dist.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
863. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o clustalw2phylip clustalw2phylip-clustalw2phylip.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
864. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o ame ame-ame.o ame-ramen_scan.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
865. libtool: link: x86_64-pc-linux-gnu-gcc -DCL_MAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o ceqlogo ceqlogo-ceqlogo.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
866. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o centrimo centrimo-centrimo.o centrimo-html-monolith.o centrimo-json-writer.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
867. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o draw-mhmm draw_mhmm-draw-mhmm.o draw_mhmm-read-mhmm.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
868. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o fasta-io fasta_io-fasta-io.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
869. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o gendb gendb-gendb.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
870. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o fimo fimo-fimo.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
871. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o getsize getsize.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
872. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o glam2 glam2-glam2_alphabet.o glam2-glam2_args.o glam2-glam2_column_sample.o glam2-glam2_dirichlet.o glam2-glam2_dna_prior.o glam2-glam2_fasta.o glam2-glam2_glam2.o glam2-glam2_glam2_aln.o glam2-glam2_init.o glam2-glam2_output.o glam2-glam2_recode3_20comp.o glam2-glam2_site_sample.o glam2-glam2_util.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
873. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o gomo gomo-gomo.o gomo-gomo_highlight.o gomo-merger.o gomo-ranksum_test.o gomo-read_csv.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
874. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o gomo_highlight gomo_highlight-gomo_highlight.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
875. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o llr llr-llr.o llr-logs.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
876. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o glam2format glam2format-glam2_glam2format.o glam2format-glam2_alignment.o glam2format-glam2_fasta.o glam2format-glam2_util.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
877. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o log-hmm log_hmm-log-hmm.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
878. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o mast mast-diagram.o mast-mast.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
879. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o glam2mask glam2mask-glam2_glam2mask.o glam2mask-glam2_alignment.o glam2mask-glam2_fasta.o glam2mask-glam2_util.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
880. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o mast2txt mast2txt-mast2txt.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
881. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o mcast mcast-mcast.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
882. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o meme.bin meme_bin-banner.o meme_bin-branching_search.o meme_bin-calculate_p_y.o meme_bin-discretize.o meme_bin-display.o meme_bin-dpalign.o meme_bin-em.o meme_bin-init.o meme_bin-justlike.o meme_bin-likelihood.o meme_bin-llr.o meme_bin-logs.o meme_bin-meme.o meme_bin-meme-print-html.o meme_bin-meme_util.o meme_bin-message.o meme_bin-mp.o meme_bin-oops.o meme_bin-partition.o meme_bin-prior.o meme_bin-psp.o meme_bin-read_seq_file.o meme_bin-seed.o meme_bin-seed_diffs.o meme_bin-seq2theta.o meme_bin-sp_matrix.o meme_bin-starts.o meme_bin-subseq7.o meme_bin-tcm.o meme_bin-verbosity.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
883. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o meme2images meme2images-meme2images.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
884. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o mhmm mhmm-mhmm.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
885. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o mhmm-io mhmm_io-mhmm-io.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
886. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o glam2scan glam2scan-glam2_alignment.o glam2scan-glam2_alphabet.o glam2scan-glam2_dna_prior.o glam2scan-glam2_fasta.o glam2scan-glam2_dirichlet.o glam2scan-glam2_heap.o glam2scan-glam2_motif.o glam2scan-glam2_scan.o glam2scan-glam2_scan_args.o glam2scan-glam2_scan_init.o glam2scan-glam2_scan_output.o glam2scan-glam2_recode3_20comp.o glam2scan-glam2_util.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
887. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o mhmme mhmme-mhmme.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
888. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o mhmms mhmms-mhmms.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
889. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o mhmmscan mhmmscan-mhmmscan.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
890. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o motiph motiph-motiph.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
891. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o pmp_bf pmp_bf-pmp_bf.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
892. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o ramen ramen-ramen.o ramen-ramen_scan.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lm -lmpi -lexslt -lxslt -lxml2 -lm
893. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DSHADOW -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o shadow shadow-shadow.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
894. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o llr llr-llr.o llr-logs.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
895. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o spamo spamo-cisml-sax.o spamo-spamo.o spamo-spamo-cisml.o spamo-spamo-matches.o spamo-spamo-output.o spamo-spamo-scan.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
896. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o gomo_highlight gomo_highlight-gomo_highlight.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
897. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o tree tree-tree.o libcommon.la -lmpi -lexslt -lxslt -lxml2 -lm
898. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o qvalue qvalue-qvalue.o libcommon.la -lm -lmpi -lexslt -lxslt -lxml2 -lm
899. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o gomo gomo-gomo.o gomo-gomo_highlight.o gomo-merger.o gomo-ranksum_test.o gomo-read_csv.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
900. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o ranksum_test ranksum_test-ranksum_test.o libcommon.la -lm -lmpi -lexslt -lxslt -lxml2 -lm
901. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o mast mast-diagram.o mast-mast.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
902. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o mast2txt mast2txt-mast2txt.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
903. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o log-hmm log_hmm-log-hmm.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
904. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o mcast mcast-mcast.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
905. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o mhmm mhmm-mhmm.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
906. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o meme2images meme2images-meme2images.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
907. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o mhmm-io mhmm_io-mhmm-io.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
908. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o libcommon.la -lm -lmpi -lexslt -lxslt -lxml2 -lm
909. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o reduce-alignment reduce_alignment-reduce-alignment.o libcommon.la -lm -lmpi -lexslt -lxslt -lxml2 -lm
910. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o meme.bin meme_bin-banner.o meme_bin-branching_search.o meme_bin-calculate_p_y.o meme_bin-discretize.o meme_bin-display.o meme_bin-dpalign.o meme_bin-em.o meme_bin-init.o meme_bin-justlike.o meme_bin-likelihood.o meme_bin-llr.o meme_bin-logs.o meme_bin-meme.o meme_bin-meme-print-html.o meme_bin-meme_util.o meme_bin-message.o meme_bin-mp.o meme_bin-oops.o meme_bin-partition.o meme_bin-prior.o meme_bin-psp.o meme_bin-read_seq_file.o meme_bin-seed.o meme_bin-seed_diffs.o meme_bin-seq2theta.o meme_bin-sp_matrix.o meme_bin-starts.o meme_bin-subseq7.o meme_bin-tcm.o meme_bin-verbosity.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
911. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o libcommon.la -lm -lmpi -lexslt -lxslt -lxml2 -lm
912. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o mhmme mhmme-mhmme.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
913. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o mhmms mhmms-mhmms.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
914. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o mhmmscan mhmmscan-mhmmscan.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
915. libtool: link: x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o motiph motiph-motiph.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
916. libtool: link: x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o pmp_bf pmp_bf-pmp_bf.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
917. libtool: link: x86_64-pc-linux-gnu-gcc -DSHADOW -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o shadow shadow-shadow.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
918. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o ramen ramen-ramen.o ramen-ramen_scan.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
919. libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o spamo spamo-cisml-sax.o spamo-spamo.o spamo-spamo-cisml.o spamo-spamo-matches.o spamo-spamo-output.o spamo-spamo-scan.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
920. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o tree tree-tree.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
921. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o qvalue qvalue-qvalue.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
922. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o ranksum_test ranksum_test-ranksum_test.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
923. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o readseq readseq-readseq.o readseq-ureadseq.o -lmpi -lexslt -lxslt -lxml2 -lm
924. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
925. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o reduce-alignment reduce_alignment-reduce-alignment.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
926. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
927. libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o readseq readseq-readseq.o readseq-ureadseq.o -Wl,--as-needed /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
928. /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -Wl,--as-needed -o tomtom tomtom-tomtom.o libcommon.la -lxml2 -lz -lm -ldl -L/usr/lib64 -lxslt -lxml2 -lz -lm -lrt -lexslt -lmpi -lexslt -lxslt -lxml2 -lm
929. libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -I/usr/include/libxml2 -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DUNIX -D__USE_FIXED_PROTOTYPES__ -Wl,-O1 -o tomtom tomtom-tomtom.o -Wl,--as-needed ./.libs/libcommon.a -L/usr/lib64 -lz /usr/lib64/libmpi.so -ldl -lrt -lnsl -lutil -lhwloc -lexslt -lxslt -lxml2 -lm -pthread
930. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
931. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
932. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
933. Making all in scripts
934. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
935. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' ama-qvalues.pl.in > ama-qvalues; \
936. chmod +x ama-qvalues
937. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' beeml2meme.pl.in > beeml2meme; \
938. chmod +x beeml2meme
939. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' cat_max.pl.in > cat_max; \
940. chmod +x cat_max
941. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' compare_dates.pl.in > compare_dates; \
942. chmod +x compare_dates
943. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' dreme.py.in > dreme; \
944. chmod +x dreme
945. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' fasta-center.pl.in > fasta-center; \
946. chmod +x fasta-center
947. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' fasta-dinucleotide-shuffle.py.in > fasta-dinucleotide-shuffle; \
948. chmod +x fasta-dinucleotide-shuffle
949. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' fasta-fetch.pl.in > fasta-fetch; \
950. chmod +x fasta-fetch
951. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' fasta-get-markov.pl.in > fasta-get-markov; \
952. chmod +x fasta-get-markov
953. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' fasta-hamming-enrich.py.in > fasta-hamming-enrich; \
954. chmod +x fasta-hamming-enrich
955. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' fasta-make-index.pl.in > fasta-make-index; \
956. chmod +x fasta-make-index
957. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' fasta-shuffle-letters.pl.in > fasta-shuffle-letters; \
958. chmod +x fasta-shuffle-letters
959. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' fasta-subsample.pl.in > fasta-subsample; \
960. chmod +x fasta-subsample
961. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' fasta-unique-names.pl.in > fasta-unique-names; \
962. chmod +x fasta-unique-names
963. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' glam2html.py.in > glam2html; \
964. chmod +x glam2html
965. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' glam2psfm.py.in > glam2psfm; \
966. chmod +x glam2psfm
967. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' glam2scan2html.py.in > glam2scan2html; \
968. chmod +x glam2scan2html
969. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' get_db_csv.pl.in > get_db_csv; \
970. chmod +x get_db_csv
971. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' chen2meme.pl.in > chen2meme; \
972. chmod +x chen2meme
973. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' jaspar2meme.pl.in > jaspar2meme; \
974. chmod +x jaspar2meme
975. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' hart2meme-bkg.pl.in > hart2meme-bkg; \
976. chmod +x hart2meme-bkg
977. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' hartemink2psp.pl.in > hartemink2psp; \
978. chmod +x hartemink2psp
979. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' iupac2meme.pl.in > iupac2meme; \
980. chmod +x iupac2meme
981. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' meme.csh.in > meme; \
982. chmod +x meme
983. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' meme-chip.pl.in > meme-chip; \
984. chmod +x meme-chip
985. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' meme-get-motif.pl.in > meme-get-motif; \
986. chmod +x meme-get-motif
987. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' meme2meme.pl.in > meme2meme; \
988. chmod +x meme2meme
989. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' mhmm2html.pl.in > mhmm2html; \
990. chmod +x mhmm2html
991. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' nmica2meme.pl.in > nmica2meme; \
992. chmod +x nmica2meme
993. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' priority2meme.pl.in > priority2meme; \
994. chmod +x priority2meme
995. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' psp-gen.pl.in > psp-gen; \
996. chmod +x psp-gen
997. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' rna2meme.pl.in > rna2meme; \
998. chmod +x rna2meme
999. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' scpd2meme.pl.in > scpd2meme; \
1000. chmod +x scpd2meme
1001. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' taipale2meme.pl.in > taipale2meme; \
1002. chmod +x taipale2meme
1003. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' tamo2meme.pl.in > tamo2meme; \
1004. chmod +x tamo2meme
1005. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' transfac2meme.pl.in > transfac2meme; \
1006. chmod +x transfac2meme
1007. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' uniprobe2meme.pl.in > uniprobe2meme; \
1008. chmod +x uniprobe2meme
1009. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' update_db.pl.in > update_db; \
1010. chmod +x update_db
1011. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' MemeWebUtils.pm.in > MemeWebUtils.pm
1012. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' convert2html.pl.in > convert2html.pl; \
1013. chmod +x convert2html.pl
1014. cp fasta-dinucleotide-shuffle fasta-dinucleotide-shuffle.py
1015. cp fasta-hamming-enrich fasta-hamming-enrich.py
1016. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
1017. Making all in tests
1018. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1019. Making all in ame
1020. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/ame'
1021. make[3]: Nothing to be done for `all'.
1022. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/ame'
1023. Making all in clustalw2fasta
1024. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/clustalw2fasta'
1025. make[3]: Nothing to be done for `all'.
1026. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/clustalw2fasta'
1027. Making all in centrimo
1028. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/centrimo'
1029. make[3]: Nothing to be done for `all'.
1030. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/centrimo'
1031. Making all in common
1032. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/common'
1033. make[3]: Nothing to be done for `all'.
1034. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/common'
1035. Making all in draw-mhmm
1036. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/draw-mhmm'
1037. make[3]: Nothing to be done for `all'.
1038. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/draw-mhmm'
1039. Making all in dreme
1040. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/dreme'
1041. make[3]: Nothing to be done for `all'.
1042. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/dreme'
1043. Making all in fasta-center
1044. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fasta-center'
1045. make[3]: Nothing to be done for `all'.
1046. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fasta-center'
1047. Making all in fimo
1048. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fimo'
1049. make[3]: Nothing to be done for `all'.
1050. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fimo'
1051. Making all in gomo
1052. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/gomo'
1053. make[3]: Nothing to be done for `all'.
1054. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/gomo'
1055. Making all in mast
1056. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mast'
1057. make[3]: Nothing to be done for `all'.
1058. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mast'
1059. Making all in mcast
1060. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mcast'
1061. make[3]: Nothing to be done for `all'.
1062. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mcast'
1063. Making all in meme
1064. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/meme'
1065. make[3]: Nothing to be done for `all'.
1066. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/meme'
1067. Making all in mhmm
1068. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmm'
1069. make[3]: Nothing to be done for `all'.
1070. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmm'
1071. Making all in mhmms
1072. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmms'
1073. make[3]: Nothing to be done for `all'.
1074. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmms'
1075. Making all in mhmmscan
1076. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmmscan'
1077. make[3]: Nothing to be done for `all'.
1078. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmmscan'
1079. Making all in motiph
1080. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/motiph'
1081. make[3]: Nothing to be done for `all'.
1082. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/motiph'
1083. Making all in psp-gen
1084. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/psp-gen'
1085. make[3]: Nothing to be done for `all'.
1086. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/psp-gen'
1087. Making all in qvalue
1088. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/qvalue'
1089. make[3]: Nothing to be done for `all'.
1090. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/qvalue'
1091. Making all in scaffold
1092. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/scaffold'
1093. make[3]: Nothing to be done for `all'.
1094. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/scaffold'
1095. Making all in spamo
1096. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/spamo'
1097. make[3]: Nothing to be done for `all'.
1098. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/spamo'
1099. Making all in tomtom
1100. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/tomtom'
1101. make[3]: Nothing to be done for `all'.
1102. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/tomtom'
1103. Making all in web
1104. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/web'
1105. make[3]: Nothing to be done for `all'.
1106. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/web'
1107. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1108. make[3]: Nothing to be done for `all-am'.
1109. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1110. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1111. Making all in website
1112. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1113. Making all in scripts
1114. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website/scripts'
1115. sed -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' changetoweb.txt > changetoweb
1116. sed -e 's%use lib qw(.)%use lib qw(/usr/lib64/perl)%' \
1117. -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' metameme.txt > metameme
1118. sed -e 's%#!/usr/bin/perl%#!/usr/bin/perl%' oldmeme2meme.txt > oldmeme2meme
1119. /bin/sed -e 's%@SITE_CONTACT@%@tbamd64%' -e 's%@METAMEME_SITE_CONTACT@%%' -e 's%@BIN_DIR@%/usr/bin%' -e 's%@MODULE_DIR@%/usr/lib64/perl%' -e 's%@MEMEDIR@%/usr%' -e 's%@METAMEMEDIR@%/usr%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@METAMEME_WEB_DIR@%%' -e 's%@MAX_TIME@%7200%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@METAMEME_SITE_URL@%%' Globals.txt > Globals.pm
1120. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website/scripts'
1121. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1122. make[3]: Nothing to be done for `all-am'.
1123. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1124. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1125. Making all in doc
1126. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1127. Making all in images
1128. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc/images'
1129. make[3]: Nothing to be done for `all'.
1130. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc/images'
1131. Making all in .
1132. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1133. ../src/xsltproc_lite ./options.xsl alphtype.xml alphtype.html
1134. ../src/xsltproc_lite ./options.xsl ama.xml ama.html
1135. ../src/xsltproc_lite ./options.xsl ame.xml ame.html
1136. ../src/xsltproc_lite ./options.xsl beadstring.xml beadstring.html
1137. ../src/xsltproc_lite ./options.xsl ceqlogo.xml ceqlogo.html
1138. ../src/xsltproc_lite ./options.xsl clustalw2phylip.xml clustalw2phylip.html
1139. ../src/xsltproc_lite ./options.xsl compute-prior-dist.xml compute-prior-dist.html
1140. ../src/xsltproc_lite ./options.xsl draw-mhmm.xml draw-mhmm.html
1141. ../src/xsltproc_lite ./options.xsl dreme.xml dreme.html
1142. ../src/xsltproc_lite ./options.xsl fasta-get-markov.xml fasta-get-markov.html
1143. ../src/xsltproc_lite ./options.xsl fasta-io.xml fasta-io.html
1144. ../src/xsltproc_lite ./options.xsl fimo.xml fimo.html
1145. ../src/xsltproc_lite ./options.xsl fitevd.xml fitevd.html
1146. ../src/xsltproc_lite ./options.xsl gendb.xml gendb.html
1147. ../src/xsltproc_lite ./options.xsl getsize.xml getsize.html
1148. ../src/xsltproc_lite ./options.xsl gomo.xml gomo.html
1149. ../src/xsltproc_lite ./options.xsl log-hmm.xml log-hmm.html
1150. ../src/xsltproc_lite ./options.xsl mcast.xml mcast.html
1151. ../src/xsltproc_lite ./options.xsl meme-chip-tutorial.xml meme-chip-tutorial.html
1152. ../src/xsltproc_lite ./options.xsl meme-io.xml meme-io.html
1153. ../src/xsltproc_lite ./options.xsl mhmm.xml mhmm.html
1154. ../src/xsltproc_lite ./options.xsl mhmme.xml mhmme.html
1155. ../src/xsltproc_lite ./options.xsl mhmms.xml mhmms.html
1156. ../src/xsltproc_lite ./options.xsl miao.xml miao.html
1157. /bin/sed -e 's%\@VERSION\@%4.8.1%g' -e 's%\@CONTACT\@%@tbamd64%g' -e 's%\@METAMEME_CONTACT\@%%g' -e 's%\@URL\@%http://tbamd64/meme%g' modified-template-footer.in > modified-template-footer.js
1158. ../src/xsltproc_lite ./options.xsl motiph.xml motiph.html
1159. ../src/xsltproc_lite ./options.xsl pmp_bf.xml pmp_bf.html
1160. ../src/xsltproc_lite ./options.xsl psp-gen.xml psp-gen.html
1161. ../src/xsltproc_lite ./options.xsl qvalue.xml qvalue.html
1162. ../src/xsltproc_lite ./options.xsl readseq.xml readseq.html
1163. ../src/xsltproc_lite ./options.xsl reconcile-tree-alignment.xml reconcile-tree-alignment.html
1164. ../src/xsltproc_lite ./options.xsl reduce-alignment.xml reduce-alignment.html
1165. ../src/xsltproc_lite ./options.xsl remove-alignment-gaps.xml remove-alignment-gaps.html
1166. ../src/xsltproc_lite ./options.xsl shadow.xml shadow.html
1167. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1168. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1169. Making all in etc
1170. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/etc'
1171. touch fasta_db.csv
1172. touch gomo_db.csv
1173. touch motif_db.csv
1174. /bin/sed -e 's%@MEMEDIR@%/usr%' -e 's%@MEMEDB@%/usr/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@METAMEME_URL@%http://tbamd64/meme%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/%' constants.js.in > constants.js
1175. /bin/sed -e 's%@MEMEDIR@%/usr%' -e 's%@MEMEDB@%/usr/db%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@METAMEME_URL@%http://tbamd64/meme%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/%' constants.xsl.in > constants.xsl
1176. /bin/sed 's/tname/delay_draw.js/' xsl-wrapper.in | /bin/sed '5r delay_draw.js' > delay_draw.js.xsl
1177. /bin/sed 's/tname/dreme-to-html.css/' xsl-wrapper.in | /bin/sed '5r dreme-to-html.css' > dreme-to-html.css.xsl
1178. /bin/sed 's/tname/dreme-to-html.js/' xsl-wrapper.in | /bin/sed '5r dreme-to-html.js' > dreme-to-html.js.xsl
1179. /bin/sed -e 's%@CENTRIMO_SERVICE@%/usr/bin/centrimo_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' centrimo_config.xml.in > centrimo_config.xml
1180. /bin/sed -e 's%@FIMO_SERVICE@%/usr/bin/fimo_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' fimo_config.xml.in > fimo_config.xml
1181. /bin/sed -e 's%@GLAM2_SERVICE@%/usr/bin/glam2_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' glam2_config.xml.in > glam2_config.xml
1182. /bin/sed -e 's%@GLAM2SCAN_SERVICE@%/usr/bin/glam2scan_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' glam2scan_config.xml.in > glam2scan_config.xml
1183. /bin/sed -e 's%@DREME_SERVICE@%/usr/bin/dreme_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' dreme_config.xml.in > dreme_config.xml
1184. /bin/sed -e 's%@GOMO_SERVICE@%/usr/bin/gomo_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' gomo_config.xml.in > gomo_config.xml
1185. /bin/sed -e 's%@MAST_SERVICE@%/usr/bin/mast_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' mast_config.xml.in > mast_config.xml
1186. /bin/sed -e 's%@MCAST_SERVICE@%/usr/bin/mcast_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' mcast_config.xml.in > mcast_config.xml
1187. /bin/sed -e 's%@MEME_SERVICE@%/usr/bin/meme_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' meme_config.xml.in > meme_config.xml
1188. /bin/sed -e 's%@MEMECHIP_SERVICE@%/usr/bin/meme-chip_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' meme-chip_config.xml.in > meme-chip_config.xml
1189. /bin/sed 's/tname/meme.css/' xsl-wrapper.in | /bin/sed '5r meme.css' > meme.css.xsl
1190. /bin/sed 's/tname/motif_logo.js/' xsl-wrapper.in | /bin/sed '5r motif_logo.js' > motif_logo.js.xsl
1191. /bin/sed 's/tname/spamo-to-html.css/' xsl-wrapper.in | /bin/sed '5r spamo-to-html.css' > spamo-to-html.css.xsl
1192. /bin/sed 's/tname/spamo-to-html.js/' xsl-wrapper.in | /bin/sed '5r spamo-to-html.js' > spamo-to-html.js.xsl
1193. /bin/sed 's/tname/spamo_graph.js/' xsl-wrapper.in | /bin/sed '5r spamo_graph.js' > spamo_graph.js.xsl
1194. /bin/sed -e 's%@SPAMO_SERVICE@%/usr/bin/spamo_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' spamo_config.xml.in > spamo_config.xml
1195. /bin/sed -e 's%@TOMTOM_SERVICE@%/usr/bin/tomtom_webservice%' -e 's%@SERVICE_VERSION@%4.8.1%' tomtom_config.xml.in > tomtom_config.xml
1196. /usr/bin/perl -I ../scripts/ -MCatList -e 'CatList::index_catlist_csv("fasta_db.csv", "fasta_db.index")'
1197. /usr/bin/perl -I ../scripts/ -MCatList -e 'CatList::index_catlist_csv("gomo_db.csv", "gomo_db.index")'
1198. /usr/bin/perl -I ../scripts/ -MCatList -e 'CatList::index_catlist_csv("motif_db.csv", "motif_db.index")'
1199. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/etc'
1200. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
1201. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
1202. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
1203. >>> Source compiled.
1204. make -j24 -j1 test
1205. cd scripts; make check
1206. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
1207. make check-TESTS
1208. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
1209. /bin/sed -e 's%@ARCHIVE_REVISION@%caa7e0031528%' -e 's%@ARCHIVE_DATE@%Tue Feb 7 14:03:40 EST 2012%' -e 's%@ARCHIVE_VERSION@%4.8.1%' -e 's%@WEB_DIR@%/usr/web%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%/usr/bin/perl%' -e 's%@WHICHCONVERT@%/usr/bin/convert%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@PERLMODDIR@%/usr/lib64/perl%' -e 's%@PERLLIBDIR@%/usr/lib64/perl%' -e 's%@WHICHPYTHON@%/usr/bin/python%' -e 's%@WHICHGHOSTSCRIPT@%/usr/bin/gs%' -e 's%@MACH_ID@%linux%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@mail@%/usr/bin/mail%' -e 's%\@CONTACT\@%@tbamd64%' -e 's%@LAM_BIN@%%' -e 's%@MPICMD@%%' -e 's%@MEMEDIR@%/usr%' -e 's%@MEME_ETC_DIR@%../etc%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@HOST_NAME@%tbamd64%' -e 's%@MEMEUSER@%%' -e 's%@MPI_TYPE@%%' -e 's%@S_VERSION@%4.8.1%' -e 's%@SITE_URL@%http://tbamd64/meme%' -e 's%@OPAL@%no%' -e 's%@DOCDIR@%/usr/share/doc/meme/%' metatest.pl.in > metatest; \
1210. chmod +x metatest
1212. Meme test for
1213. ---------------------------------
1214. Dataset Model result
1215. ---------------------------------
1216. crp0 oops OK
1217. crp0 zoops OK
1218. crp0 tcm OK
1219. psp_test zoops_psp OK
1221. Mast test for
1222. ---------------------------------
1223. Dataset Model result
1224. ---------------------------------
1225. crp0 oops OK
1226. crp0 zoops OK
1227. crp0 tcm OK
1229. PASS: runcheck
1230. *******************************************************************************
1231. Testing ama . . .
1232. ama --verbosity 1 --scoring max-odds gomo/motif.meme gomo/seqs.fasta gomo/seqs.bg 1>> output_file 2>> $error_messages
1233. SUCCESS
1234. *******************************************************************************
1235. Testing ama . . .
1236. ama --pvalues --verbosity 1 --cs gomo/motif.meme gomo/seqs_red.fasta gomo/seqs.norc.bg 1>> output_file 2>> $error_messages
1237. SUCCESS
1238. *******************************************************************************
1239. Testing ame . . .
1240. ame --oc results/ame1 --silent --verbose 1 --fix-partition 169 --bgformat 0 /var/tmp/sample-dna-Klf1-877100 Jaspar-subset.meme &>> $all_messages
1241. SUCCESS
1242. *******************************************************************************
1243. Testing centrimo . . .
1244. centrimo -verbosity 1 -oc results/centrimo ../doc/examples/sample-dna-Klf1.fa centrimo/dreme-Klf1.txt &>> $all_messages
1245. SUCCESS
1246. *******************************************************************************
1247. Testing dreme . . .
1248. dreme -oc results/dreme -v 1 -noxslt -p Klf1-200-100.s &>> $all_messages
1249. SUCCESS
1250. *******************************************************************************
1251. Testing dreme . . .
1252. dreme -norc -oc results/dreme -v 1 -noxslt -p Klf1-200-100.s &>> $all_messages
1253. SUCCESS
1254. *******************************************************************************
1255. Testing fasta-center . . .
1256. fasta-center -len 100 < Klf1-200.s 1>> output_file 2>> $error_messages
1257. SUCCESS
1258. *******************************************************************************
1259. Testing fasta-dinucleotide-shuffle . . .
1260. fasta-dinucleotide-shuffle -f Klf1-200-100.s -t -dinuc 1>> output_file 2>> $error_messages
1261. SUCCESS
1262. *******************************************************************************
1263. Testing fimo . . .
1264. fimo --text --motif-pseudo 0.01 fimo/MCM1.meme.html fimo/spiked.fasta 1>> output_file 2>> $error_messages
1265. SUCCESS
1266. *******************************************************************************
1267. Testing fimo . . .
1268. fimo --text --motif 2 --motif 3 --output-pthresh 0.01 common/crp0.meme.html motiph/spiked.fasta 1>> output_file 2>> $error_messages
1269. SUCCESS
1270. *******************************************************************************
1271. Testing fimo . . .
1272. fimo --text --psp fimo/GCN4_YPD.psp --prior-dist fimo/prior.dist.txt fimo/GCN4.meme fimo/GCN4_YPD.fasta 1>> output_file 2>> $error_messages
1273. SUCCESS
1274. *******************************************************************************
1275. Testing fimo . . .
1276. fimo --text --psp fimo/GCN4_YPD-genomic.psp --prior-dist fimo/prior.dist.txt fimo/GCN4.meme fimo/GCN4_YPD-genomic.fasta 1>> output_file 2>> $error_messages
1277. SUCCESS
1278. *******************************************************************************
1279. Testing gomo . . .
1280. gomo --nostatus --verbosity 1 --text gomo/GO2Gene.map.csv gomo/ama.nozscoring.xml 1>> output_file 2>> $error_messages
1281. SUCCESS
1282. *******************************************************************************
1283. Testing gomo . . .
1284. gomo --nostatus --verbosity 1 --text gomo/GO2Gene.map.csv gomo/ama.nozscoring.xml gomo/ama.nozscoring.xml 1>> output_file 2>> $error_messages
1285. SUCCESS
1286. *******************************************************************************
1287. Testing mcast . . .
1288. mcast -oc results/mcast1 meme/meme.lex0.zoops common/lex0.s &>> $all_messages
1289. SUCCESS
1290. *******************************************************************************
1291. Testing mhmms . . .
1292. mhmms --maxseqs 3 --quiet mhmm/crp0.linear.mhmm common/crp0.fasta 1>> output_file 2>> $error_messages
1293. SUCCESS
1294. *******************************************************************************
1295. Testing mhmms . . .
1296. mhmms --global --quiet mhmm/lipo.linear.mhmm common/lipo.fasta 1>> output_file 2>> $error_messages
1297. SUCCESS
1298. *******************************************************************************
1299. Testing mhmms . . .
1300. mhmms --quiet --motif-scoring mhmm/lipo.linear.mhmm mhmms/r1635.fasta 1>> output_file 2>> $error_messages
1301. SUCCESS
1302. *******************************************************************************
1303. Testing mhmms . . .
1304. mhmms --motif-scoring --quiet mhmms/r1584.hmm mhmms/r1584.fasta 1>> output_file 2>> $error_messages
1305. SUCCESS
1306. *******************************************************************************
1307. Testing mhmmscan . . .
1308. mhmmscan --text mhmm/crp0.linear.mhmm common/crp0.fasta 1>> output_file 2>> $error_messages
1309. SUCCESS
1310. *******************************************************************************
1311. Testing motiph . . .
1312. motiph --seed 0 --bg 2 --pseudocount 0.01 --text motiph/spiked.aln motiph/yeast.tree motiph/MCM1.meme.html 1>> output_file 2>> $error_messages
1313. SUCCESS
1314. *******************************************************************************
1315. Testing motiph . . .
1316. motiph --seed 0 --bg 2 --pseudocount 0.01 --text --output-pthresh 1 --motif 2 --motif 3 motiph/spiked.aln motiph/yeast.tree common/crp0.meme.html 1>> output_file 2>> $error_messages
1317. SUCCESS
1318. *******************************************************************************
1319. Testing psp-gen . . .
1320. psp-gen -revcomp -pos psp-gen/one-peak-dna.fasta -neg psp-gen/all-A.fasta 1>> output_file 2>> $error_messages
1321. SUCCESS
1322. *******************************************************************************
1323. Testing psp-gen . . .
1324. psp-gen -alpha prot -maxrange -triples -pos psp-gen/one-peak-protein.fasta -neg psp-gen/all-A.fasta 1>> output_file 2>> $error_messages
1325. SUCCESS
1326. *******************************************************************************
1327. Testing qvalue . . .
1328. qvalue --header 1 --append --column 2 --seed 7718 qvalue/uniform.txt 1>> output_file 2>> $error_messages
1329. SUCCESS
1330. *******************************************************************************
1331. Testing shadow . . .
1332. shadow --output-pthresh 0.1 --bg 2 --text motiph/spiked.aln motiph/yeast.tree 1>> output_file 2>> $error_messages
1333. SUCCESS
1334. *******************************************************************************
1335. Testing spamo . . .
1336. spamo -oc results/spamo -v 1 -znoxslt -margin 20 -shared 1 spamo/limits.fasta spamo/primary.meme spamo/secondary.meme &>> $all_messages
1337. SUCCESS
1338. *******************************************************************************
1339. Testing spamo . . .
1340. spamo -oc results/spamo -v 1 -znoxslt -margin 20 -shared 1 spamo/random.fasta spamo/primary.meme spamo/secondary.meme &>> $all_messages
1341. SUCCESS
1342. *******************************************************************************
1343. Testing tomtom . . .
1344. tomtom -verbosity 1 -seed 1 -dist allr -text -incomplete-scores common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1345. SUCCESS
1346. *******************************************************************************
1347. Testing tomtom . . .
1348. tomtom -verbosity 1 -seed 1 -dist ed -text -incomplete-scores common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1349. SUCCESS
1350. *******************************************************************************
1351. Testing tomtom . . .
1352. tomtom -verbosity 1 -seed 1 -dist kullback -text -incomplete-scores common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1353. SUCCESS
1354. *******************************************************************************
1355. Testing tomtom . . .
1356. tomtom -verbosity 1 -seed 1 -dist pearson -text -incomplete-scores common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1357. SUCCESS
1358. *******************************************************************************
1359. Testing tomtom . . .
1360. tomtom -verbosity 1 -seed 1 -dist sandelin -text -incomplete-scores common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1361. SUCCESS
1362. *******************************************************************************
1363. Testing tomtom . . .
1364. tomtom -verbosity 1 -seed 1 -dist blic1 -text -incomplete-scores common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1365. SUCCESS
1366. *******************************************************************************
1367. Testing tomtom . . .
1368. tomtom -verbosity 1 -seed 1 -dist blic5 -text -incomplete-scores common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1369. SUCCESS
1370. *******************************************************************************
1371. Testing tomtom . . .
1372. tomtom -verbosity 1 -seed 1 -dist allr -text common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1373. SUCCESS
1374. *******************************************************************************
1375. Testing tomtom . . .
1376. tomtom -verbosity 1 -seed 1 -dist ed -text common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1377. SUCCESS
1378. *******************************************************************************
1379. Testing tomtom . . .
1380. tomtom -verbosity 1 -seed 1 -dist kullback -text common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1381. SUCCESS
1382. *******************************************************************************
1383. Testing tomtom . . .
1384. tomtom -verbosity 1 -seed 1 -dist pearson -text common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1385. SUCCESS
1386. *******************************************************************************
1387. Testing tomtom . . .
1388. tomtom -verbosity 1 -seed 1 -dist sandelin -text common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1389. SUCCESS
1390. *******************************************************************************
1391. Testing tomtom . . .
1392. tomtom -verbosity 1 -seed 1 -dist blic1 -text common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1393. SUCCESS
1394. *******************************************************************************
1395. Testing tomtom . . .
1396. tomtom -verbosity 1 -seed 1 -dist blic5 -text common/sample.meme common/sample.meme 1>> output_file 2>> $error_messages
1397. SUCCESS
1398. *******************************************************************************
1399. PASS: metatest
1400. ==================
1401. All 2 tests passed
1402. ==================
1403. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
1404. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
1406. >>> Install meme-4.8.1-r1 into /tmp/portage/sci-biology/meme-4.8.1-r1/image/ category sci-biology
1407. make -j24 DESTDIR=/tmp/portage/sci-biology/meme-4.8.1-r1/image/ install
1408. Making install in src
1409. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
1410. make install-recursive
1411. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
1412. Making install in filters
1413. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
1414. Making install in purge
1415. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/purge'
1416. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/purge'
1417. make[5]: Nothing to be done for `install-data-am'.
1418. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1419. /bin/sh ../../../libtool --mode=install /usr/bin/install -c purge '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1420. libtool: install: /usr/bin/install -c purge /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/purge
1421. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/purge'
1422. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/purge'
1423. Making install in dust
1424. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/dust'
1425. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/dust'
1426. make[5]: Nothing to be done for `install-data-am'.
1427. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1428. /bin/sh ../../../libtool --mode=install /usr/bin/install -c dust '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1429. libtool: install: /usr/bin/install -c dust /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/dust
1430. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/dust'
1431. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters/dust'
1432. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
1433. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
1434. make[5]: Nothing to be done for `install-exec-am'.
1435. make[5]: Nothing to be done for `install-data-am'.
1436. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
1437. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
1438. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/filters'
1439. Making install in libxml2
1440. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
1441. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
1442. make[5]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
1443. make[5]: Nothing to be done for `install-exec-am'.
1444. make[5]: Nothing to be done for `install-data-am'.
1445. make[5]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
1446. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
1447. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxml2'
1448. Making install in libxslt
1449. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxslt'
1450. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxslt'
1451. make[4]: Nothing to be done for `install-exec-am'.
1452. make[4]: Nothing to be done for `install-data-am'.
1453. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxslt'
1454. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libxslt'
1455. Making install in libexslt
1456. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libexslt'
1457. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libexslt'
1458. make[4]: Nothing to be done for `install-exec-am'.
1459. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libexslt'
1460. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src/libexslt'
1461. Making install in .
1462. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
1463. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
1464. make[4]: Nothing to be done for `install-data-am'.
1465. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1466. /bin/sh ../libtool --mode=install /usr/bin/install -c alphtype ama ame beadstring ceqlogo centrimo clustalw-io clustalw2fasta clustalw2phylip compute-prior-dist compute-uniform-priors draw-mhmm fasta-io fimo fitevd gendb getsize glam2 glam2format glam2mask glam2scan gomo gomo_highlight llr log-hmm mast mast2txt mcast meme.bin meme-xml-html meme2images mhmm mhmm-io mhmme mhmms mhmmscan motiph pmp_bf ramen readseq shadow spamo tomtom tree qvalue ranksum_test reconcile-tree-alignment reduce-alignment remove-alignment-gaps xsltproc_lite '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1467. libtool: install: /usr/bin/install -c alphtype /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/alphtype
1468. libtool: install: /usr/bin/install -c ama /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/ama
1469. libtool: install: /usr/bin/install -c ame /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/ame
1470. libtool: install: /usr/bin/install -c beadstring /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/beadstring
1471. libtool: install: /usr/bin/install -c ceqlogo /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/ceqlogo
1472. libtool: install: /usr/bin/install -c centrimo /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/centrimo
1473. libtool: install: /usr/bin/install -c clustalw-io /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/clustalw-io
1474. libtool: install: /usr/bin/install -c clustalw2fasta /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/clustalw2fasta
1475. libtool: install: /usr/bin/install -c clustalw2phylip /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/clustalw2phylip
1476. libtool: install: /usr/bin/install -c compute-prior-dist /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/compute-prior-dist
1477. libtool: install: /usr/bin/install -c compute-uniform-priors /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/compute-uniform-priors
1478. libtool: install: /usr/bin/install -c draw-mhmm /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/draw-mhmm
1479. libtool: install: /usr/bin/install -c fasta-io /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/fasta-io
1480. libtool: install: /usr/bin/install -c fimo /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/fimo
1481. libtool: install: /usr/bin/install -c fitevd /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/fitevd
1482. libtool: install: /usr/bin/install -c gendb /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/gendb
1483. libtool: install: /usr/bin/install -c getsize /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/getsize
1484. libtool: install: /usr/bin/install -c glam2 /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/glam2
1485. libtool: install: /usr/bin/install -c glam2format /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/glam2format
1486. libtool: install: /usr/bin/install -c glam2mask /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/glam2mask
1487. libtool: install: /usr/bin/install -c glam2scan /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/glam2scan
1488. libtool: install: /usr/bin/install -c gomo /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/gomo
1489. libtool: install: /usr/bin/install -c gomo_highlight /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/gomo_highlight
1490. libtool: install: /usr/bin/install -c llr /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/llr
1491. libtool: install: /usr/bin/install -c log-hmm /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/log-hmm
1492. libtool: install: /usr/bin/install -c mast /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/mast
1493. libtool: install: /usr/bin/install -c mast2txt /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/mast2txt
1494. libtool: install: /usr/bin/install -c mcast /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/mcast
1495. libtool: install: /usr/bin/install -c meme.bin /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/meme.bin
1496. libtool: install: /usr/bin/install -c meme-xml-html /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/meme-xml-html
1497. libtool: install: /usr/bin/install -c meme2images /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/meme2images
1498. libtool: install: /usr/bin/install -c mhmm /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/mhmm
1499. libtool: install: /usr/bin/install -c mhmm-io /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/mhmm-io
1500. libtool: install: /usr/bin/install -c mhmme /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/mhmme
1501. libtool: install: /usr/bin/install -c mhmms /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/mhmms
1502. libtool: install: /usr/bin/install -c mhmmscan /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/mhmmscan
1503. libtool: install: /usr/bin/install -c motiph /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/motiph
1504. libtool: install: /usr/bin/install -c pmp_bf /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/pmp_bf
1505. libtool: install: /usr/bin/install -c ramen /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/ramen
1506. libtool: install: /usr/bin/install -c readseq /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/readseq
1507. libtool: install: /usr/bin/install -c shadow /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/shadow
1508. libtool: install: /usr/bin/install -c spamo /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/spamo
1509. libtool: install: /usr/bin/install -c tomtom /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/tomtom
1510. libtool: install: /usr/bin/install -c tree /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/tree
1511. libtool: install: /usr/bin/install -c qvalue /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/qvalue
1512. libtool: install: /usr/bin/install -c ranksum_test /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/ranksum_test
1513. libtool: install: /usr/bin/install -c reconcile-tree-alignment /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/reconcile-tree-alignment
1514. libtool: install: /usr/bin/install -c reduce-alignment /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/reduce-alignment
1515. libtool: install: /usr/bin/install -c remove-alignment-gaps /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/remove-alignment-gaps
1516. libtool: install: /usr/bin/install -c xsltproc_lite /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin/xsltproc_lite
1517. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
1518. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
1519. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
1520. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/src'
1521. Making install in scripts
1522. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
1523. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
1524. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1525. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/lib64/perl'
1526. /usr/bin/install -c download hypergeometric.py plotgen prior_utils.pl read_fasta_file.pl sd sequence.py update_meme_tests ama-qvalues beeml2meme cat_max compare_dates dreme fasta-center fasta-dinucleotide-shuffle fasta-dinucleotide-shuffle.py fasta-fetch fasta-get-markov fasta-hamming-enrich fasta-hamming-enrich.py fasta-make-index fasta-shuffle-letters fasta-subsample fasta-unique-names glam2html glam2psfm glam2scan2html get_db_csv chen2meme jaspar2meme hart2meme-bkg hartemink2psp iupac2meme meme meme-chip meme-get-motif meme2meme mhmm2html nmica2meme priority2meme '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1527. /usr/bin/install -c MemeWebUtils.pm convert2html.pl ExecUtils.pm MotifUtils.pm CatList.pm '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/lib64/perl'
1528. /usr/bin/install -c psp-gen rna2meme scpd2meme taipale2meme tamo2meme transfac2meme uniprobe2meme update_db '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1529. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
1530. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/scripts'
1531. Making install in tests
1532. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1533. Making install in ame
1534. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/ame'
1535. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/ame'
1536. make[3]: Nothing to be done for `install-exec-am'.
1537. make[3]: Nothing to be done for `install-data-am'.
1538. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/ame'
1539. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/ame'
1540. Making install in clustalw2fasta
1541. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/clustalw2fasta'
1542. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/clustalw2fasta'
1543. make[3]: Nothing to be done for `install-exec-am'.
1544. make[3]: Nothing to be done for `install-data-am'.
1545. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/clustalw2fasta'
1546. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/clustalw2fasta'
1547. Making install in centrimo
1548. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/centrimo'
1549. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/centrimo'
1550. make[3]: Nothing to be done for `install-exec-am'.
1551. make[3]: Nothing to be done for `install-data-am'.
1552. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/centrimo'
1553. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/centrimo'
1554. Making install in common
1555. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/common'
1556. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/common'
1557. make[3]: Nothing to be done for `install-exec-am'.
1558. make[3]: Nothing to be done for `install-data-am'.
1559. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/common'
1560. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/common'
1561. Making install in draw-mhmm
1562. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/draw-mhmm'
1563. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/draw-mhmm'
1564. make[3]: Nothing to be done for `install-exec-am'.
1565. make[3]: Nothing to be done for `install-data-am'.
1566. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/draw-mhmm'
1567. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/draw-mhmm'
1568. Making install in dreme
1569. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/dreme'
1570. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/dreme'
1571. make[3]: Nothing to be done for `install-exec-am'.
1572. make[3]: Nothing to be done for `install-data-am'.
1573. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/dreme'
1574. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/dreme'
1575. Making install in fasta-center
1576. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fasta-center'
1577. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fasta-center'
1578. make[3]: Nothing to be done for `install-exec-am'.
1579. make[3]: Nothing to be done for `install-data-am'.
1580. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fasta-center'
1581. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fasta-center'
1582. Making install in fimo
1583. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fimo'
1584. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fimo'
1585. make[3]: Nothing to be done for `install-exec-am'.
1586. make[3]: Nothing to be done for `install-data-am'.
1587. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fimo'
1588. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/fimo'
1589. Making install in gomo
1590. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/gomo'
1591. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/gomo'
1592. make[3]: Nothing to be done for `install-exec-am'.
1593. make[3]: Nothing to be done for `install-data-am'.
1594. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/gomo'
1595. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/gomo'
1596. Making install in mast
1597. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mast'
1598. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mast'
1599. make[3]: Nothing to be done for `install-exec-am'.
1600. make[3]: Nothing to be done for `install-data-am'.
1601. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mast'
1602. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mast'
1603. Making install in mcast
1604. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mcast'
1605. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mcast'
1606. make[3]: Nothing to be done for `install-exec-am'.
1607. make[3]: Nothing to be done for `install-data-am'.
1608. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mcast'
1609. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mcast'
1610. Making install in meme
1611. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/meme'
1612. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/meme'
1613. make[3]: Nothing to be done for `install-exec-am'.
1614. make[3]: Nothing to be done for `install-data-am'.
1615. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/meme'
1616. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/meme'
1617. Making install in mhmm
1618. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmm'
1619. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmm'
1620. make[3]: Nothing to be done for `install-exec-am'.
1621. make[3]: Nothing to be done for `install-data-am'.
1622. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmm'
1623. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmm'
1624. Making install in mhmms
1625. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmms'
1626. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmms'
1627. make[3]: Nothing to be done for `install-exec-am'.
1628. make[3]: Nothing to be done for `install-data-am'.
1629. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmms'
1630. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmms'
1631. Making install in mhmmscan
1632. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmmscan'
1633. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmmscan'
1634. make[3]: Nothing to be done for `install-exec-am'.
1635. make[3]: Nothing to be done for `install-data-am'.
1636. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmmscan'
1637. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/mhmmscan'
1638. Making install in motiph
1639. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/motiph'
1640. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/motiph'
1641. make[3]: Nothing to be done for `install-exec-am'.
1642. make[3]: Nothing to be done for `install-data-am'.
1643. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/motiph'
1644. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/motiph'
1645. Making install in psp-gen
1646. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/psp-gen'
1647. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/psp-gen'
1648. make[3]: Nothing to be done for `install-exec-am'.
1649. make[3]: Nothing to be done for `install-data-am'.
1650. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/psp-gen'
1651. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/psp-gen'
1652. Making install in qvalue
1653. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/qvalue'
1654. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/qvalue'
1655. make[3]: Nothing to be done for `install-exec-am'.
1656. make[3]: Nothing to be done for `install-data-am'.
1657. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/qvalue'
1658. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/qvalue'
1659. Making install in scaffold
1660. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/scaffold'
1661. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/scaffold'
1662. make[3]: Nothing to be done for `install-exec-am'.
1663. make[3]: Nothing to be done for `install-data-am'.
1664. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/scaffold'
1665. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/scaffold'
1666. Making install in spamo
1667. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/spamo'
1668. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/spamo'
1669. make[3]: Nothing to be done for `install-exec-am'.
1670. make[3]: Nothing to be done for `install-data-am'.
1671. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/spamo'
1672. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/spamo'
1673. Making install in tomtom
1674. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/tomtom'
1675. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/tomtom'
1676. make[3]: Nothing to be done for `install-exec-am'.
1677. make[3]: Nothing to be done for `install-data-am'.
1678. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/tomtom'
1679. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/tomtom'
1680. Making install in web
1681. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/web'
1682. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/web'
1683. make[3]: Nothing to be done for `install-exec-am'.
1684. make[3]: Nothing to be done for `install-data-am'.
1685. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/web'
1686. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests/web'
1687. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1688. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1689. make[3]: Nothing to be done for `install-exec-am'.
1690. make[3]: Nothing to be done for `install-data-am'.
1691. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1692. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1693. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/tests'
1694. Making install in website
1695. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1696. Making install in scripts
1697. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website/scripts'
1698. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website/scripts'
1699. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1700. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/lib64/perl'
1701. /usr/bin/install -c changetoweb metameme oldmeme2meme '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/bin'
1702. /usr/bin/install -c Globals.pm '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/lib64/perl'
1703. make install-exec-hook
1704. make[4]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website/scripts'
1705. make[4]: Nothing to be done for `install-exec-hook'.
1706. make[4]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website/scripts'
1707. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website/scripts'
1708. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website/scripts'
1709. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1710. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1711. make[3]: Nothing to be done for `install-exec-am'.
1712. make[3]: Nothing to be done for `install-data-am'.
1713. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1714. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1715. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/website'
1716. Making install in doc
1717. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1718. Making install in images
1719. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc/images'
1720. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc/images'
1721. make[3]: Nothing to be done for `install-exec-am'.
1722. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/share/doc/meme/html/images'
1723. /usr/bin/install -c -m 644 cbrc_logo.png centrimo_logo.png dreme_logo.png fimo_logo.png glam2_logo.png glam2scan_logo.png mcast-logo.png memechip_logo.png nbcr_logo_trans.gif ncrr_logo.gif schematic.fig schematic.png sdsc_logo.png spamo_logo.png tomtom_logo.png uq_logo.png ucsd_logo.png UWlogo150p.gif webserver_schema.png '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/share/doc/meme/html/images'
1724. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc/images'
1725. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc/images'
1726. Making install in .
1727. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1728. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1729. make[3]: Nothing to be done for `install-exec-am'.
1730. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/share/doc/meme/html'
1731. /usr/bin/install -c -m 644 alphabets.html ama-qvalues.html authors.html beeml2meme.html bfile-format.html centrimo.html chen2meme.html cite.html clustalw2fasta.html clustalw-format.html copyright.html dreme-tutorial.html fasta-format.html fasta-subsample.html glam2.css glam2format_man.html glam2mask_man.html glam2scan_man.html glam2_alphabet.html glam2_dirichlet.html glam2_install.html glam2_man.html glam2-template-header.js GLAM2_method.pdf glam2_ref.html glam2_tut.html godag-format.html gomo-format.html gomo_highlight.html install.html iupac.html iupac2meme.html jaspar2meme.html lipo.fasta lipo.linear.all.mhmms lipo.linear.mhmm lipo.meme.html lipo.meme.stripped.txt mast.html mast2txt.html '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/share/doc/meme/html'
1732. /usr/bin/install -c -m 644 meme.dtd meme.html meme-chip.html meme-format.html meme-install.html meme-suite-logo.js meme-suite.css meme-suite-new.css meme2meme.html metameme.css meta-meme.gif mhmm-output.html mhmmscan.html overview.html priority2meme.html purge.html release-notes.html rna2meme.html scpd2meme.html scripting.html sdsc.gif select-star-species.html spamo.html standards.html tamo2meme.html tomtom.html transfac2meme.html transfac-format.html uniprobe2meme.html alphtype.html ama.html ame.html beadstring.html ceqlogo.html clustalw2phylip.html compute-prior-dist.html draw-mhmm.html dreme.html fasta-get-markov.html fasta-io.html '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/share/doc/meme/html'
1733. /usr/bin/install -c -m 644 fimo.html fitevd.html gendb.html getsize.html gomo.html log-hmm.html mcast.html meme-chip-tutorial.html meme-io.html mhmm.html mhmme.html mhmms.html miao.html modified-template-footer.js motiph.html pmp_bf.html psp-gen.html qvalue.html readseq.html reconcile-tree-alignment.html reduce-alignment.html remove-alignment-gaps.html shadow.html '/tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/share/doc/meme/html'
1734. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1735. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1736. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/doc'
1737. Making install in etc
1738. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/etc'
1739. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/etc'
1740. make[2]: Nothing to be done for `install-exec-am'.
1741. /bin/mkdir -p '/tmp/portage/sci-biology/meme-4.8.1-r1/image//etc/meme'
1742. /usr/bin/install -c -m 644 db_general.csv db_other_genomes.csv fasta_db.csv gomo_db.csv motif_db.csv fasta_db.index gomo_db.index motif_db.index beadstring.xsl bkg.jpg block-diagram.xsl centrimo_template.html centrimo_template.css centrimo_template.js cisml.css cisml-to-gff3.xsl cisml-to-html.xsl cisml-to-text.xsl dreme-to-html.xsl dreme-to-text.xsl eps_context.js fimo-to-wiggle.xsl fimo-to-gff3.xsl fimo-to-html.xsl fimo-to-text.xsl gomo-to-html.xsl help.gif hmm-text.xsl logging.conf mast-to-html.xsl mcast-to-gff3.xsl mcast-to-html.xsl mcast-to-text.xsl mcast-to-wiggle.xsl meme.css meme-chip.tmpl meme-to-html.xsl meme.doc motif_logo.js prior1.plib '/tmp/portage/sci-biology/meme-4.8.1-r1/image//etc/meme'
1743. /usr/bin/install -c -m 644 prior30.plib spamo_template.eps spamo-to-html.xsl template.eps template.svg tomtom-to-html.xsl constants.js constants.xsl delay_draw.js.xsl dreme-to-html.css.xsl dreme-to-html.js.xsl centrimo_config.xml fimo_config.xml glam2_config.xml glam2scan_config.xml dreme_config.xml gomo_config.xml mast_config.xml mcast_config.xml meme_config.xml meme-chip_config.xml meme.css.xsl motif_logo.js.xsl spamo-to-html.css.xsl spamo-to-html.js.xsl spamo_graph.js.xsl spamo_config.xml tomtom_config.xml '/tmp/portage/sci-biology/meme-4.8.1-r1/image//etc/meme'
1744. make install-data-hook
1745. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/etc'
1746. make[3]: Nothing to be done for `install-data-hook'.
1747. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/etc'
1748. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/etc'
1749. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1/etc'
1750. make[1]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
1751. make[2]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
1752. make[2]: Nothing to be done for `install-exec-am'.
1753. mkdir -p /tmp/portage/sci-biology/meme-4.8.1-r1/image//var/log/meme
1754. chmod a+w /tmp/portage/sci-biology/meme-4.8.1-r1/image//var/log/meme
1755. make install-data-hook
1756. make[3]: Entering directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
1757. mkdir -p /tmp/portage/sci-biology/meme-4.8.1-r1/image//usr/db
1758. make[3]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
1759. make[2]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
1760. make[1]: Leaving directory `/tmp/portage/sci-biology/meme-4.8.1-r1/work/meme_4.8.1'
1761. >>> Completed installing meme-4.8.1-r1 into /tmp/portage/sci-biology/meme-4.8.1-r1/image/
1763. * Tinderbox QA Warning! Misplaced documentation
1764. /usr/share/doc/meme
1765. * Tinderbox QA Warning (end)! Misplaced documentation
1766. strip: x86_64-pc-linux-gnu-strip --strip-unneeded -R .comment -R .GCC.command.line
1767. usr/bin/dust
1768. usr/bin/ame
1769. usr/bin/beadstring
1770. usr/bin/compute-prior-dist
1771. usr/bin/fimo
1772. usr/bin/fitevd
1773. usr/bin/gendb
1774. usr/bin/getsize
1775. usr/bin/gomo_highlight
1776. usr/bin/mcast
1777. usr/bin/meme2images
1778. usr/bin/motiph
1779. usr/bin/spamo
1780. usr/bin/qvalue
1781. usr/bin/reduce-alignment
1782. usr/bin/remove-alignment-gaps
1783. usr/bin/ceqlogo
1784. usr/bin/purge
1785. usr/bin/compute-uniform-priors
1786. usr/bin/draw-mhmm
1787. usr/bin/glam2
1788. usr/bin/glam2format
1789. usr/bin/glam2mask
1790. usr/bin/glam2scan
1791. usr/bin/llr
1792. usr/bin/log-hmm
1793. usr/bin/mast
1794. usr/bin/meme.bin
1795. usr/bin/mhmm
1796. usr/bin/mhmm-io
1797. usr/bin/mhmme
1798. usr/bin/mhmms
1799. usr/bin/tomtom
1800. usr/bin/pmp_bf
1801. usr/bin/ranksum_test
1802. usr/bin/xsltproc_lite
1803. usr/bin/alphtype
1804. usr/bin/ama
1805. usr/bin/centrimo
1806. usr/bin/clustalw2fasta
1807. usr/bin/clustalw-io
1808. usr/bin/clustalw2phylip
1809. usr/bin/fasta-io
1810. usr/bin/gomo
1811. usr/bin/mast2txt
1812. usr/bin/meme-xml-html
1813. usr/bin/mhmmscan
1814. usr/bin/ramen
1815. usr/bin/meme-readseq
1816. usr/bin/shadow
1817. usr/bin/meme-tree
1818. usr/bin/reconcile-tree-alignment
1819. ecompressdir: bzip2 -9 /usr/share/doc
1820. * This package will overwrite one or more files that may belong to other
1821. * packages (see list below). You can use a command such as `portageq
1822. * owners / <filename>` to identify the installed package that owns a
1823. * file. If portageq reports that only one package owns a file then do
1824. * NOT file a bug report. A bug report is only useful if it identifies at
1825. * least two or more packages that are known to install the same file(s).
1826. * If a collision occurs and you can not explain where the file came from
1827. * then you should simply ignore the collision since there is not enough
1828. * information to determine if a real problem exists. Please do NOT file
1829. * a bug report at http://bugs.gentoo.org unless you report exactly which
1830. * two packages install the same file(s). Once again, please do NOT file
1831. * a bug report unless you have completely understood the above message.
1832. *
1833. * Detected file collision(s):
1834. *
1835. * /usr/bin/purge
1836. *
1837. * Searching all installed packages for file collisions...
1838. *
1839. * Press Ctrl-C to Stop
1840. *
1841. * net-proxy/squid-3.3.1:0::gentoo
1842. * /usr/bin/purge
1843. *
1844. * Package 'sci-biology/meme-4.8.1-r1' NOT merged due to file collisions.
1845. * If necessary, refer to your elog messages for the whole content of the
1846. * above message.