1. * Package: sci-biology/maqview-0.2.5-r1
2. * Repository: gentoo
3. * Maintainer: weaver@gentoo.org sci-biology@gentoo.org
4. * USE: amd64 elibc_glibc kernel_linux multilib test userland_GNU
5. * FEATURES: sandbox test userpriv usersandbox
6. Installed LAPACK for library directory lib64
7. [1] reference *
8. Installed BLAS for library directory lib64
9. [1] reference *
10. Installed CBLAS for library directory lib64
11. [1] gsl
12. [2] reference *
13. >>> Unpacking source...
14. >>> Unpacking maqview-0.2.5.tar.gz to /tmp/portage/sci-biology/maqview-0.2.5-r1/work
15. >>> Source unpacked in /tmp/portage/sci-biology/maqview-0.2.5-r1/work
16. >>> Preparing source in /tmp/portage/sci-biology/maqview-0.2.5-r1/work/maqview ...
17. * Applying 0.2.5-ldflags.patch ...
18. [ ok ]
19. * Applying 0.2.5-zlib.patch ...
20. [ ok ]
21. * Running eautoreconf in '/tmp/portage/sci-biology/maqview-0.2.5-r1/work/maqview' ...
22. * Running aclocal ...
23. [ ok ]
24. * Running autoconf ...
25. [ ok ]
26. * Running autoheader ...
27. [ ok ]
28. * Running automake --add-missing --copy ...
29. [ ok ]
30. >>> Source prepared.
31. >>> Configuring source in /tmp/portage/sci-biology/maqview-0.2.5-r1/work/maqview ...
32. * econf: updating maqview/config.sub with /usr/share/gnuconfig/config.sub
33. * econf: updating maqview/config.guess with /usr/share/gnuconfig/config.guess
34. ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-dependency-tracking
35. configure: loading site script /usr/share/config.site
36. checking for a BSD-compatible install... /usr/bin/install -c
37. checking whether build environment is sane... yes
38. checking for a thread-safe mkdir -p... /bin/mkdir -p
39. checking for gawk... gawk
40. checking whether make sets $(MAKE)... yes
41. checking build system type... x86_64-pc-linux-gnu
42. checking host system type... x86_64-pc-linux-gnu
43. checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
44. checking whether the C compiler works... yes
45. checking for C compiler default output file name... a.out
46. checking for suffix of executables...
47. checking whether we are cross compiling... no
48. checking for suffix of object files... o
49. checking whether we are using the GNU C compiler... yes
50. checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
51. checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
52. checking for style of include used by make... GNU
53. checking dependency style of x86_64-pc-linux-gnu-gcc... none
54. checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
55. checking whether we are using the GNU C++ compiler... yes
56. checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
57. checking dependency style of x86_64-pc-linux-gnu-g++... none
58. checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
59. checking for grep that handles long lines and -e... /bin/grep
60. checking for egrep... /bin/grep -E
61. checking for ANSI C header files... yes
62. checking GL/glut.h usability... yes
63. checking GL/glut.h presence... yes
64. checking for GL/glut.h... yes
65. checking for glutMouseWheelFunc in -lglut... yes
66. checking that generated files are newer than configure... done
67. configure: creating ./config.status
68. config.status: creating Makefile
69. config.status: creating config.h
70. config.status: executing depfiles commands
71. >>> Source configured.
72. >>> Compiling source in /tmp/portage/sci-biology/maqview-0.2.5-r1/work/maqview ...
73. make -j24
74. make all-am
75. make[1]: Entering directory `/tmp/portage/sci-biology/maqview-0.2.5-r1/work/maqview'
76. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c zrio_main.c
77. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c btree.c
78. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c maqmap_index.c
79. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c zrio.c
80. x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -c -o stdhashc.o stdhashc.cc
81. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c cns_cache.c
82. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c const.c
83. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c maqmap_index_main.c
84. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c read_cache.c
85. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c view_goto.c
86. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c view_panel.c
87. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c gl_gui.c
88. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c MainFrame.c
89. x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DHAVE_FREEGLUT -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -DMAQ_LONGREADS -c socket_view.c
90. btree.c: In function 'btree_load':
91. btree.c:284:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
92. btree.c:295:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
93. btree.c:296:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
94. btree.c:297:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
95. btree.c:298:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
96. zrio.c: In function 'load_access':
97. zrio.c:356:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
98. zrio.c:364:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
99. zrio.c:365:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
100. zrio.c:366:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
101. cns_cache.c: In function 'open_cns_cache':
102. cns_cache.c:193:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
103. cns_cache.c:203:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
104. cns_cache.c:204:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
105. cns_cache.c:205:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
106. In file included from stdhashc.cc:2:0:
107. stdhash.hh: In instantiation of 'bool hash_map_misc<keytype_t, valtype_t>::insert(const keytype_t&, const valtype_t&) [with keytype_t = unsigned int; valtype_t = int]':
108. stdhashc.cc:72:51: required from here
109. stdhash.hh:496:81: error: 'direct_insert_aux' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
110. stdhash.hh:496:81: note: declarations in dependent base '__lh3_hash_base_class<unsigned int>' are not found by unqualified lookup
111. stdhash.hh:496:81: note: use 'this->direct_insert_aux' instead
112. make[1]: *** [stdhashc.o] Error 1
113. make[1]: *** Waiting for unfinished jobs....
114. socket_view.c: In function 'runViewServer':
115. socket_view.c:291:44: warning: passing argument 3 of 'accept' from incompatible pointer type [enabled by default]
116. In file included from socket_view.h:8:0,
117. from socket_view.c:1:
118. /usr/include/sys/socket.h:244:12: note: expected 'socklen_t * __restrict__' but argument is of type 'size_t *'
119. socket_view.c: In function 'closeViewClient':
120. socket_view.c:405:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
121. make[1]: Leaving directory `/tmp/portage/sci-biology/maqview-0.2.5-r1/work/maqview'
122. make: *** [all] Error 2
123. * ERROR: sci-biology/maqview-0.2.5-r1 failed (compile phase):
124. * emake failed
125. *
126. * If you need support, post the output of `emerge --info '=sci-biology/maqview-0.2.5-r1'`,
127. * the complete build log and the output of `emerge -pqv '=sci-biology/maqview-0.2.5-r1'`.
128. * The complete build log is located at '/var/log/portage/sci-biology:maqview-0.2.5-r1:20130111-080206.log'.
129. * For convenience, a symlink to the build log is located at '/tmp/portage/sci-biology/maqview-0.2.5-r1/temp/build.log'.
130. * The ebuild environment file is located at '/tmp/portage/sci-biology/maqview-0.2.5-r1/temp/environment'.
131. * Working directory: '/tmp/portage/sci-biology/maqview-0.2.5-r1/work/maqview'
132. * S: '/tmp/portage/sci-biology/maqview-0.2.5-r1/work/maqview'