- * Package: sci-biology/arb-5.2
- * Repository: gentoo
- * Maintainer: weaver@gentoo.org sci-biology@gentoo.org
- * USE: amd64 elibc_glibc kernel_linux multilib opengl test userland_GNU
- * FEATURES: sandbox test userpriv usersandbox
- >>> Unpacking source...
- >>> Unpacking arb-5.2.tgz to /tmp/portage/sci-biology/arb-5.2/work
- >>> Unpacking arb-5.2-linker.patch.bz2 to /tmp/portage/sci-biology/arb-5.2/work
- >>> Source unpacked in /tmp/portage/sci-biology/arb-5.2/work
- >>> Preparing source in /tmp/portage/sci-biology/arb-5.2/work/arb-5.2 ...
- * Applying arb-5.2-linker.patch ...
- [ ok ]
- * Applying 5.1-libs.patch ...
- [ ok ]
- * Applying 5.1-bfr-overflow.patch ...
- [ ok ]
- * Applying 5.2-libpng15.patch ...
- [ ok ]
- make -j24 ARBHOME=/tmp/portage/sci-biology/arb-5.2/work/arb-5.2 links
- SOURCE_TOOLS/generate_all_links.sh
- make[1]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin'
- make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule.
- find . -type l -exec rm {} \;
- ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` .
- make[1]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin'
- generate_all_links.sh done.
- touch SOURCE_TOOLS/generate_all_links.stamp
- >>> Source prepared.
- >>> Configuring source in /tmp/portage/sci-biology/arb-5.2/work/arb-5.2 ...
- >>> Source configured.
- >>> Compiling source in /tmp/portage/sci-biology/arb-5.2/work/arb-5.2 ...
- make -j24 ARBHOME=/tmp/portage/sci-biology/arb-5.2/work/arb-5.2 PATH=/usr/lib64/portage/bin/ebuild-helpers/4:/usr/lib64/portage/bin/ebuild-helpers:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.7.1:/opt/dmd/bin:/opt/hp/hpacucli:/usr/x86_64-pc-linux-gnu/gnat-gcc-bin/4.4:/usr/libexec/gnat-gcc/x86_64-pc-linux-gnu/4.4:/usr/libexec/gpc/x86_64-pc-linux-gnu/3.4:/opt/tivoli/tsm/client/ba/bin:/opt/eagle-5.11.0/bin:/opt/flexlm/bin:/opt/vmware/bin:/opt/aws-as-tools/bin:/opt/aws-elb-tools/bin:/opt/aws-iam-tools/bin:/opt/aws-rds-tools/bin:/usr/bin/cdsclient:/opt/cuda/bin:/opt/ec2-ami-tools/bin:/opt/ec2-api-tools/bin:/usr/ti-linux-gnu/tigcc-bin/4.1.2:/usr/ti-linux-gnu/bin:/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin LD_LIBRARY_PATH=:/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/lib tarfile
- make clean2
- make[1]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE'
- rm -f PT_new_design.o PT_family.o PT_prefixtree.o PT_main.o PT_io.o PT_etc.o PT_secundaer.o PT_buildtree.o PT_match.o PT_findEx.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC'
- rm -f aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o aisc
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- rm -f mkptypes.o aisc_mkpt
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ALIV3'
- rm -f a3.o a3_seq.o a3_ptree1.o a3_ptree2.o a3_helix.o a3_darray.o a3_ali.o a3_matrix.o a3_arbdb.o a3_basen.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDB2'
- rm -f adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o ad_config.o *.a *.so
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDB'
- rm -f adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o *.a *.so
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDBPP'
- rm -f adtsequence.o adt_edit.o adtali.o adextended.o adseq.o adspecies.o admain.o adali.o liste.o *.a *.so
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARB_GDE'
- rm -f GDE_ParseMenu.o GDE.o GDE_event.o GDE_arbdb_io.o GDE_HGLfile.o GDE_Genbank.o GDE_FileIO.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDBS'
- rm -f adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWTC'
- rm -f AWTC_next_neighbours.o AWTC_constructSequence.o AWTC_seq_search.o AWTC_submission.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/CONSENSUS_TREE'
- rm -f CT_part.o CT_hash.o CT_ntree.o CT_rbtree.o CT_dtree.o CT_ctree.o CT_mem.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWTI'
- rm -f AWTI_import.o AWTI_export.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/CONVERTALN'
- rm -f main.o fconv.o mg.o genbank.o macke.o phylip.o paup.o util.o date.o embl.o gcg.o printable.o alma.o routines.o convert.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_convert_aln
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWT'
- rm -f AWT_input_mask.o AWT_hotkeys.o AWT_www.o AWT_tables.o AWT_irstree.o AWT_asciiprint.o AWT_map_key.o AWT_tree_cmp.o AWT_seq_colors.o AWT_pro_a_nucs.o AWT_csp.o AWT_canvas.o AWT_dtree.o AWT_tree.o AWT_tree_cb.o AWT_nei.o AWT_filter.o AWT_sel_boxes.o AWT_canio.o AWT_nds.o AWT_query_and_functions.o AWT_file_selection.o AWT_preset.o AWT_seq_dna.o AWT_seq_protein.o AWT_seq_simple_pro.o AWT_codon_table.o AWT_iupac.o AWT_config_manager.o AWT_advice.o AWT_db_browser.o AWT_attributes.o AWT_changekey.o AWT_item_sel_list.o AWT_macro.o AWT_translate.o *.a *.so
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/DBSERVER'
- rm -f db_server.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/DIST'
- rm -f DI_mldist.o DI_protdist.o DI_compress_matrix.o DI_view_matrix.o DI_save_matr.o DI_main.o DI_matr.o distanalyse.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/EDIT'
- rm -f edit.o edit_naligner.o edit_tools.o ed_conf.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/EISPACK'
- rm -f eispack.o d_sign.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/EDIT4'
- rm -f ED4_protein_2nd_structure.o ED4_ProteinViewer.o ED4_search.o ED4_cursor.o ED4_dump.o ED4_nds.o ED4_secedit.o ED4_RNA3D.o ED4_main.o ED4_mini_classes.o ED4_edit_string.o ED4_base.o ED4_manager.o ED4_terminal.o ED4_root.o EDB_root_bact.o ED4_window.o ED4_members.o ED4_no_class.o ED4_list.o ED4_text_terminals.o ED4_tools.o ED4_block.o ED4_visualizeSAI.o edit_naligner.o graph_aligner_gui.o ED4_dots.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GENOM'
- rm -f GEN_interface.o GEN_map.o GEN_graphic.o GEN_gene.o GEN_nds.o GEN_color_groups.o GEN_translations.o EXP_interface.o EXP_main.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ALIV3'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GENOM_IMPORT'
- rm *.o
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ISLAND_HOPPING'
- rm -f island_hopping.o i-hopper.o align.o memory.o trnsprob.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDBPP'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARB_GDE'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/MERGE'
- rm -f MG_checkfield.o MG_main.o MG_trees.o MG_alignment.o MG_species.o MG_extendeds.o MG_names.o MG_gene_species.o MG_configs.o MG_preserves.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/CONVERTALN'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWTI'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWTC'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/DBSERVER'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/MULTI_PROBE'
- rm -f MP_main.o MP_Window.o MP_noclass.o MP_sonde.o MP_sondentopf.o MP_mo_liste.o MP_probe.o MP_GenerationDuplicates.o MP_Generation.o MP_probe_combi_statistic.o MP_probe_tabs.o MP_permute.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/CONSENSUS_TREE'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL/glpng'
- rm -f glpng.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/EISPACK'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDB2'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/EDIT'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDB'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/DIST'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NALIGNER'
- rm -f ali_aligner.o ali_arbdb.o ali_global.o ali_main.o ali_pathmap.o ali_prealigner.o ali_profile.o ali_pt.o ali_sequence.o ali_solution.o *.a
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/CLUSTAL'
- rm -f clustalv.o amenu.o myers.o sequence.o showpair.o upgma.o util.o trees.o gcgcheck.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/clustalv
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES'
- rm -f names.o *.a
- rm: cannot remove '*.o': No such file or directory
- make[2]: [clean] Error 1 (ignored)
- rm *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GENOM'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDBS'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL/glAW'
- rm -f GLwMDrawA.o AW_window_ogl.o *.a
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/SUPPORT'
- rm -f /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/CAP2 /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/Restriction /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/Zuk_to_gen /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/count /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/findall /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/lsadt /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/sho_helix /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/varpos
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ISLAND_HOPPING'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWT'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/MOLPHY'
- rm -f Dpstree.o Ndistan.o Njdist.o Nmlklhd.o Nseqstat.o Ntranprb.o Nucml.o Nucst.o Nuctpm.o Prottpm.o abratio.o altree.o distan.o distproc.o dyhfjtt.o getseq.o matrixut.o mlklhd.o mltree.o mtrev22.o mtrev24.o mygetopt.o njmtree.o njproc.o njtree.o nucproc.o optimtpm.o protml.o protproc.o protst.o prtree.o pstree.o qltree.o seqproc.o seqstat.o sltree.o totalml.o tranprb.o tridist.o triproc.o protml
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/MERGE'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/EDIT4'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/AxML'
- rm -f axml.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/axml
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL/glpng'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/RAxML'
- rm -f axml.o raxmlParsimony.o rev_functions.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGeneric.o evaluateGeneric.o newviewGeneric.o makenewzGeneric.o evaluateGenericVector.o categorizeGeneric.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/raxmlHPC
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/CLUSTAL'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/MULTI_PROBE'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/PHYML'
- rm -f main.o utilities.o optimiz.o lk.o bionj.o models.o free.o options.o simu.o eigen.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/phyml
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PARSIMONY'
- rm -f PARS_main.o PARS_dtree.o PARS_debug.o PARS_klprops.o AP_buffer.o AP_main.o AP_tree_nlen.o AP_tree_edge.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NALIGNER'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/SUPPORT'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NTREE'
- rm -f AP_consensus.o AP_conservProfile2Gnuplot.o AP_cprofile.o AP_csp_2_gnuplot.o AP_pos_var_pars.o NT_cb.o NT_concatenate.o NT_dbrepair.o NT_edconf.o NT_extern.o NT_import.o NT_ins_col.o NT_join.o NT_main.o NT_sort.o NT_trackAliChanges.o NT_validManual.o NT_validNameParser.o NT_validNames.o ad_ali.o ad_ext.o ad_spec.o ad_transpro.o ad_trees.o *.a
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/CLUSTALW'
- rm -f *.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/clustalw
- rm: cannot remove '*.a': No such file or directory
- make[2]: [clean] Error 1 (ignored)
- rm *.bak
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/AxML'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PGT'
- rm -f main.o dialog.o arb_interface.o main_dialog.o import_dialog.o selection_dialog.o file_import.o tiff_image.o image_dialog.o plot.o analyze_window.o entry_sel_dialog.o config_dialog.o help_dialog.o msgbox.o *.a
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL/glAW'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- rm -f *.[ao]
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/TREEPUZZLE'
- rm -f src/gamma.o src/ml1.o src/ml2.o src/ml3.o src/model1.o src/model2.o src/puzzle1.o src/puzzle2.o src/sched.o src/util.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/puzzle
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/RAxML'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/PHYLIP'
- rm -f /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/clique /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/consense /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/contml /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/contrast /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dnacomp /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dnadist /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dnainvar /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dnaml /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dnamlk /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dnamove /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dnapars /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dnapenny /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dolmove /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dollop /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/dolpenny /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/factor /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/fitch /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/gendist /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/kitsch /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/mix /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/move /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/neighbor /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/pars /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/penny /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/proml /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/promlk /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/protdist /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/protpars /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/restdist /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/restml /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/retree /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/seqboot /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/treedist /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/drawgram /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/drawtree *.o
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/FASTDNAML'
- rm -f fastDNAml.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/fastdnaml
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PHYLO'
- rm -f PH_data.o PH_root.o PH_main.o PH_filt.o PH_display.o PH_matr.o *.a
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/MOLPHY'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PRIMER_DESIGN'
- rm -f PRD_Pair.o PRD_Item.o PRD_Node.o PRD_Range.o PRD_SequenceIterator.o PRD_SearchFIFO.o PRD_Design.o primer_design.o *.a
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/PHYML'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_DESIGN'
- rm -f probe_design.o SaiProbeVisualization.o probe_match_parser.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET'
- rm -f ps_node.o ps_filebuffer.o ps_database.o ps_tools.o fb_test.o ps_convert_db.o ps_merge_my_dbs.o ps_detect_weak_differences.o ps_find_probes.o ps_eval_candidates.o ps_get_probes.o ps_my2ascii.o ps_my2asciipaths.o ps_arb2asciipaths.o ps_show_result.o
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/READSEQ'
- rm -f readseq.o ureadseq.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_readseq
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/CLUSTALW'
- rm: cannot remove '*.bak': No such file or directory
- make[2]: [clean] Error 1 (ignored)
- rm *~
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/FASTDNAML'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/RNA3D'
- rm -f RNA3D_Main.o RNA3D_Interface.o RNA3D_Graphics.o RNA3D_OpenGLEngine.o RNA3D_OpenGLGraphics.o RNA3D_Textures.o RNA3D_StructureData.o RNA3D_Renderer.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SECEDIT'
- rm -f SEC_toggle.o SEC_bonddef.o SEC_db.o SEC_helix.o SEC_graphic.o SEC_structure.o SEC_read.o SEC_io.o SEC_paint.o SEC_layout.o SEC_split.o SEC_abspos.o SEC_main.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PARSIMONY'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SEQ_QUALITY'
- rm -f SQ_main.o SQ_functions.o SQ_GroupData.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SERVERCNTRL'
- rm -f servercntrl.o *.a
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/TREEPUZZLE'
- rm -f */*.[ao]
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/STAT'
- rm -f ST_quality.o ST_ml.o ST_window.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/TOOLS'
- rm -f /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_2_ascii /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_2_bin /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_a2ps /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_count_chars /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_dnarates /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_export_rates /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_export_tree /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_gene_probe /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_message /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_notify /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_primer /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_probe /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_proto_2_xsub /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_read_tree /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_replace /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_swap_rnastr
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- rm -f *.[ao]
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PGT'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/READSEQ'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NTREE'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/TREEGEN'
- rm -f base.o defines.o frand.o readcfg.o rns.o sim.o simcfg.o spreadin.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PHYLO'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/WETC'
- rm -f WETC_main.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PRIMER_DESIGN'
- rm -f /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_show_result /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_arb2asciipaths /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_my2asciipaths /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_my2ascii /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_get_probes /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_eval /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_find /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_detect /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_merge /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/ps_convert /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET/bin/fb_test
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_DESIGN'
- rm: cannot remove '*~': No such file or directory
- make[2]: [clean] Error 1 (ignored)
- rm *#
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/TREE_READ'
- rm -f TreeRead.o TreeTools.o *.a
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/WINDOW'
- rm -f AW_position.o AW_Xm.o AW_at.o AW_button.o AW_click.o AW_debug.o AW_device.o AW_font_group.o AW_global_awars.o AW_nawar.o AW_preset.o AW_print.o AW_question.o AW_size.o AW_status.o AW_window.o AW_xfig.o AW_xfigfont.o AW_xfont.o AW_xkey.o AW_window_Xm_interface.o *.a *.so
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/XML'
- rm -f xml.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SEQ_QUALITY'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SERVERCNTRL'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/TREE_WRITE'
- rm -f TreeWrite.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/STAT'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/RNA3D'
- rm -f GENH/*
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDEHELP'
- rm -f MENUS/dnamlrates.genmenu MENUS/fastdnaml.genmenu MENUS/pretty_print.genmenu MENUS/phylip_dist_org.genmenu MENUS/puzzle.genmenu MENUS/align.genmenu MENUS/warning.genmenu MENUS/molphy.genmenu MENUS/phylip_ml.genmenu MENUS/raxml.genmenu MENUS/desoete.genmenu MENUS/phylip_help.genmenu MENUS/export.genmenu MENUS/phylip_dist.genmenu MENUS/inc_fastdnaml.genmenu MENUS/import.genmenu MENUS/start_arb.genmenu MENUS/phylip_pars.genmenu ARB_GDEmenus helpfiles.lst
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/HELIX'
- rm -f BI_helix.o *.a
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SECEDIT'
- rm -f */*.[ao]
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SOURCE_TOOLS'
- rm -f generate_all_links.stamp
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin'
- find . -type l -exec rm {} \;
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/WETC'
- rm -f arb_2_ascii.o arb_2_bin.o arb_a2ps.o arb_count_chars.o arb_dnarates.o arb_export_rates.o arb_export_tree.o arb_gene_probe.o arb_message.o arb_notify.o arb_primer.o arb_probe.o arb_proto_2_xsub.o arb_read_tree.o arb_replace.o arb_swap_rnastr.o
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PERL2ARB'
- test -f Makefile && make clean
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/TREEGEN'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/AW_HELIX'
- rm -f AW_helix.o *.a
- rm: cannot remove '*#': No such file or directory
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_SET'
- make[2]: [clean] Error 1 (ignored)
- rm *\%
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/AW_NAME'
- rm -f AW_rename.o AW_names_admin.o *.a
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE/PHYLIP'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/TREE_READ'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDE'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/XML'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SOURCE_TOOLS'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/DB_SCANNER'
- rm -f db_scanner.o *.a
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/TREE_WRITE'
- rm -f GENC/*
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/FILE_BUFFER'
- rm -f FileBuffer.o *.a
- make[2]: [clean] Error 1 (ignored)
- rm -f Makefile.old proto.h debug.h ARB.c ARB.xs .depends depends.stamp Makefile.PL /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/lib/ARB.pm /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/lib/ARB.so
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/WINDOW'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/TOOLS'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/HELIX'
- rm -f GENH/*
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/REGEXPR'
- rm -f RegExpr.o *.a
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/FAST_ALIGNER'
- rm -f fast_aligner.o ClustalV.o *.a
- rm: cannot remove '*%': No such file or directory
- make[2]: [clean] Error 1 (ignored)
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GENOM_IMPORT'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/AW_HELIX'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PERL2ARB'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/AW_NAME'
- rm -f .depends
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/DB_SCANNER'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/FILE_BUFFER'
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/HELP_SOURCE'
- rm -f arb_help2xml.o /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin/arb_help2xml
- rm -f GENC/*
- cat: helpfiles.lst: No such file or directory
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/REGEXPR'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/FAST_ALIGNER'
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDEHELP'
- rm -f ./HELP_GEN/*.help
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL'
- rm -f _index.html `find ../lib/help -name "*.hlp"`
- rm -f .depends
- rm -f ./HELP_DOC_GEN/*.doc
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- rm -f html.list `find ../lib/help_html -name "*.html"`
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDEHELP'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GDEHELP'
- find: `../lib/help_html': No such file or directory
- rm -f xml.stamp dummy `find Xml -name "*.xml"`
- find: `Xml': No such file or directory
- make -C genhelp clean
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/HELP_SOURCE/genhelp'
- rm -f *.hlp
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/HELP_SOURCE/genhelp'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/HELP_SOURCE'
- find . -type f -perm -100 -exec rm {} \;
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin'
- rm -f *.last_gcc
- make[1]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make all
- make[1]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make links
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- SOURCE_TOOLS/generate_all_links.sh
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin'
- make[3]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule.
- find . -type l -exec rm {} \;
- ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` .
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin'
- generate_all_links.sh done.
- touch SOURCE_TOOLS/generate_all_links.stamp
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make com
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- -------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- cc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AISC_MKPTPS -c mkptypes.c
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--export-dynamic -rdynamic -o aisc_mkpt mkptypes.o
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- -------------------------------------------------------------------------------- Make everything in AISC
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc_commands.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc_var_ref.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc_mix.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- aisc_commands.c: In function 'int do_com_next(const char*)':
- aisc_commands.c:906:21: warning: variable 'p' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -o aisc aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC'
- -------------------------------------------------------------------------------- Make everything in NAMES_COM
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- AISC/Makefile:95: .depends: No such file or directory
- umask 002;makedepend C/*.c GENC/*.c -I GENH -I C -f- -w1 | grep -v ' /usr' | sed -e 's/^C/O/ig' > .depends_new
- makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 33): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/_G_config.h, line 15): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 39): cannot find include file "stdarg.h"
- not in GENH/stdarg.h
- not in C/stdarg.h
- not in /usr/include/stdarg.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 51): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/libio.h, line 53): cannot find include file "stdarg.h"
- not in GENH/stdarg.h
- not in C/stdarg.h
- not in /usr/include/stdarg.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/string.h, line 32): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/aisc_extern.c, line 3: cannot find include file "aisc.h"
- not in GENH/aisc.h
- not in C/aisc.h
- not in /usr/include/aisc.h
- makedepend: warning: C/aisc_extern.c (reading C/aisc_extern_privat.h, line 19): cannot find include file "attributes.h"
- not in GENH/attributes.h
- not in C/attributes.h
- not in /usr/include/attributes.h
- makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 32): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/sys/types.h, line 146): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/alloca.h, line 24): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 226): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading C/ad_varargs.h, line 1): cannot find include file "stdarg.h"
- not in GENH/stdarg.h
- not in C/stdarg.h
- not in /usr/include/stdarg.h
- makedepend: warning: C/client.c (reading /usr/include/sys/socket.h, line 29): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/bits/socket.h, line 28): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/rpc/netdb.h, line 42): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/signal.h, line 348): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading C/client.h, line 22): cannot find include file "attributes.h"
- not in GENH/attributes.h
- not in C/attributes.h
- not in /usr/include/attributes.h
- makedepend: warning: C/debug.c, line 6: cannot find include file "aisc_com.h"
- not in GENH/aisc_com.h
- not in C/aisc_com.h
- not in /usr/include/aisc_com.h
- makedepend: warning: C/server.c (reading /usr/include/limits.h, line 124): cannot find include file "limits.h"
- makedepend: warning: C/server.c, line 33: cannot find include file "aisc_com.h"
- not in aisc_com.h
- not in C/aisc_com.h
- not in GENH/aisc_com.h
- not in C/aisc_com.h
- not in /usr/include/aisc_com.h
- makedepend: warning: C/server.c (reading C/server.h, line 22): cannot find include file "attributes.h"
- not in GENH/attributes.h
- not in C/attributes.h
- not in /usr/include/attributes.h
- makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h), line 33: # error Neither DEBUG nor NDEBUG is defined!
- makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h, line 183): cannot find include file "arbdb_base.h"
- not in GENH/arbdb_base.h
- not in C/arbdb_base.h
- not in /usr/include/arbdb_base.h
- makedepend: warning: C/struct_man.c, line 5: cannot find include file "aisc.h"
- not in aisc.h
- not in C/aisc.h
- not in GENH/aisc.h
- not in C/aisc.h
- not in /usr/include/aisc.h
- makedepend: warning: C/struct_man.c (reading C/struct_man.h, line 19): cannot find include file "attributes.h"
- not in GENH/attributes.h
- not in C/attributes.h
- not in /usr/include/attributes.h
- makedepend: warning: cannot open "GENC/*.c"
- /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SOURCE_TOOLS/mv_if_diff .depends_new .depends
- .depends created.
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- ../MAKEBIN/aisc AISC/aisc.pa names.aisc GENH/aisc.h
- ../MAKEBIN/aisc AISC/aisc_com.pa names.aisc GENH/aisc_com.h
- rm -f GENH/aisc_server_extern.aisc
- rm -f GENH/aisc_server_extern.h
- ../MAKEBIN/aisc_mkpt -a C/aisc_extern.c names_extern.c >GENH/aisc_server_extern.aisc
- ../MAKEBIN/aisc_mkpt -C C/aisc_extern.c names_extern.c >GENH/aisc_server_extern.h
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/client.o C/client.c -IGENH -I. -IC
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/debug.o C/debug.c -IGENH -I. -IC
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/server.o C/server.c -IGENH -I. -IC
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/struct_man.o C/struct_man.c -IGENH -I. -IC
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/aisc_extern.o C/aisc_extern.c -IGENH -I. -IC
- ../MAKEBIN/aisc AISC/aisc_debug_globals.pa names.aisc GENC/aisc_debug_globals.c GENH/aisc_server_extern.aisc GENH/import_proto.h
- ../MAKEBIN/aisc AISC/aisc_server.pa names.aisc GENC/aisc_server.c GENH/aisc_server_extern.aisc GENH/import_proto.h
- ../MAKEBIN/aisc AISC/aisc_global.pa names.aisc GENC/aisc_global.c GENH/aisc_server_extern.aisc GENH/import_proto.h
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_debug_globals.o GENC/aisc_debug_globals.c -IGENH -I. -IC
- rm -f GENH/aisc_server_proto.h
- echo GENH/import_proto.h
- ../MAKEBIN/aisc_mkpt -C GENC/aisc_server.c >GENH/aisc_server_proto.h
- GENH/import_proto.h
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_global.o GENC/aisc_global.c -IGENH -I. -IC -DAISC_SAVE_YES
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_server.o GENC/aisc_server.c -IGENH -I. -IC -DAISC_SAVE_YES
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o names_extern.o names_extern.c -IGENH -I. -IC -DAISC_SAVE_YES
- ld -r -o client.a O/client.o O/debug.o GENC/aisc_debug_globals.o
- ld -r -o server.a O/server.o O/struct_man.o O/aisc_extern.o GENC/aisc_global.o GENC/aisc_server.o names_extern.o
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- -------------------------------------------------------------------------------- Make everything in PROBE_COM
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- AISC/Makefile:95: .depends: No such file or directory
- umask 002;makedepend C/*.c GENC/*.c -I GENH -I C -f- -w1 | grep -v ' /usr' | sed -e 's/^C/O/ig' > .depends_new
- makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 33): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/_G_config.h, line 15): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 39): cannot find include file "stdarg.h"
- not in GENH/stdarg.h
- not in C/stdarg.h
- not in /usr/include/stdarg.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 51): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/libio.h, line 53): cannot find include file "stdarg.h"
- not in GENH/stdarg.h
- not in C/stdarg.h
- not in /usr/include/stdarg.h
- makedepend: warning: C/aisc_extern.c (reading /usr/include/string.h, line 32): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/aisc_extern.c, line 3: cannot find include file "aisc.h"
- not in GENH/aisc.h
- not in C/aisc.h
- not in /usr/include/aisc.h
- makedepend: warning: C/aisc_extern.c (reading C/aisc_extern_privat.h, line 19): cannot find include file "attributes.h"
- not in GENH/attributes.h
- not in C/attributes.h
- not in /usr/include/attributes.h
- makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 32): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/sys/types.h, line 146): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/alloca.h, line 24): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 226): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading C/ad_varargs.h, line 1): cannot find include file "stdarg.h"
- not in GENH/stdarg.h
- not in C/stdarg.h
- not in /usr/include/stdarg.h
- makedepend: warning: C/client.c (reading /usr/include/sys/socket.h, line 29): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/bits/socket.h, line 28): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/rpc/netdb.h, line 42): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading /usr/include/signal.h, line 348): cannot find include file "stddef.h"
- not in GENH/stddef.h
- not in C/stddef.h
- not in /usr/include/stddef.h
- makedepend: warning: C/client.c (reading C/client.h, line 22): cannot find include file "attributes.h"
- not in GENH/attributes.h
- not in C/attributes.h
- not in /usr/include/attributes.h
- makedepend: warning: C/debug.c, line 6: cannot find include file "aisc_com.h"
- not in GENH/aisc_com.h
- not in C/aisc_com.h
- not in /usr/include/aisc_com.h
- makedepend: warning: C/server.c (reading /usr/include/limits.h, line 124): cannot find include file "limits.h"
- makedepend: warning: C/server.c, line 33: cannot find include file "aisc_com.h"
- not in aisc_com.h
- not in C/aisc_com.h
- not in GENH/aisc_com.h
- not in C/aisc_com.h
- not in /usr/include/aisc_com.h
- makedepend: warning: C/server.c (reading C/server.h, line 22): cannot find include file "attributes.h"
- not in GENH/attributes.h
- not in C/attributes.h
- not in /usr/include/attributes.h
- makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h), line 33: # error Neither DEBUG nor NDEBUG is defined!
- makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h, line 183): cannot find include file "arbdb_base.h"
- not in GENH/arbdb_base.h
- not in C/arbdb_base.h
- not in /usr/include/arbdb_base.h
- makedepend: warning: C/struct_man.c, line 5: cannot find include file "aisc.h"
- not in aisc.h
- not in C/aisc.h
- not in GENH/aisc.h
- not in C/aisc.h
- not in /usr/include/aisc.h
- makedepend: warning: C/struct_man.c (reading C/struct_man.h, line 19): cannot find include file "attributes.h"
- not in GENH/attributes.h
- not in C/attributes.h
- not in /usr/include/attributes.h
- makedepend: warning: cannot open "GENC/*.c"
- /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SOURCE_TOOLS/mv_if_diff .depends_new .depends
- .depends created.
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- ../MAKEBIN/aisc AISC/aisc.pa PT.aisc GENH/aisc.h
- ../MAKEBIN/aisc AISC/aisc_com.pa PT.aisc GENH/aisc_com.h
- rm -f GENH/aisc_server_extern.aisc
- rm -f GENH/aisc_server_extern.h
- ../MAKEBIN/aisc_mkpt -a C/aisc_extern.c PT_extern.c >GENH/aisc_server_extern.aisc
- ../MAKEBIN/aisc_mkpt -C C/aisc_extern.c PT_extern.c >GENH/aisc_server_extern.h
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/client.o C/client.c -IGENH -I. -IC
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/debug.o C/debug.c -IGENH -I. -IC
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/server.o C/server.c -IGENH -I. -IC
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/struct_man.o C/struct_man.c -IGENH -I. -IC
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/aisc_extern.o C/aisc_extern.c -IGENH -I. -IC
- ../MAKEBIN/aisc AISC/aisc_debug_globals.pa PT.aisc GENC/aisc_debug_globals.c GENH/aisc_server_extern.aisc GENH/import_proto.h
- ../MAKEBIN/aisc AISC/aisc_server.pa PT.aisc GENC/aisc_server.c GENH/aisc_server_extern.aisc GENH/import_proto.h
- ../MAKEBIN/aisc AISC/aisc_global.pa PT.aisc GENC/aisc_global.c GENH/aisc_server_extern.aisc GENH/import_proto.h
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_debug_globals.o GENC/aisc_debug_globals.c -IGENH -I. -IC
- rm -f GENH/aisc_server_proto.h
- echo GENH/import_proto.h
- GENH/import_proto.h
- ../MAKEBIN/aisc_mkpt -C GENC/aisc_server.c >GENH/aisc_server_proto.h
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_global.o GENC/aisc_global.c -IGENH -I. -IC -DAISC_SAVE_NO
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_server.o GENC/aisc_server.c -IGENH -I. -IC -DAISC_SAVE_NO
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -fno-strict-aliasing -Wno-unused -c -o PT_extern.o PT_extern.c -IGENH -I. -IC -DAISC_SAVE_NO
- ld -r -o client.a O/client.o O/debug.o GENC/aisc_debug_globals.o
- ld -r -o server.a O/server.o O/struct_man.o O/aisc_extern.o GENC/aisc_global.o GENC/aisc_server.o PT_extern.o
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make arb
- make[2]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- (cd lib;make all)
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/lib'
- test -e arb_tcp.dat || cp -p arb_tcp_org.dat arb_tcp.dat
- test -L nas && echo "lib/nas is a link - skipped" || \
- (cd nas;make all)
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/lib/nas'
- rm -f names.dat
- cp names.dat.template names.dat
- rm -f *%
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/lib/nas'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/lib'
- make arbbasic2
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- -------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- make[4]: Nothing to be done for `dummy.a'.
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- -------------------------------------------------------------------------------- Make everything in AISC
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC'
- make[4]: Nothing to be done for `dummy.a'.
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC'
- -------------------------------------------------------------------------------- Make everything in TEMPLATES
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/TEMPLATES'
- ../SOURCE_TOOLS/build_info.pl
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/TEMPLATES'
- -------------------------------------------------------------------------------- Make everything in NAMES_COM
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- make[4]: `server.a' is up to date.
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- -------------------------------------------------------------------------------- Make everything in NAMES_COM
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- make[4]: `server.a' is up to date.
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NAMES_COM'
- -------------------------------------------------------------------------------- Make everything in PROBE_COM
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- make[4]: `server.a' is up to date.
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/PROBE_COM'
- make SL/SL.dummy
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- -------------------------------------------------------------------------------- Make everything in GL
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL'
- make[5]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL/glpng'
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GL -DIN_ARB_glpng -c glpng.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- make[5]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL/glAW'
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GL -DIN_ARB_glAW -c GLwMDrawA.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GL -DIN_ARB_glAW -c AW_window_ogl.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/WINDOW
- glpng.c: In function 'DefaultAlphaCallback':
- glpng.c:45:57: warning: parameter 'red' set but not used [-Wunused-but-set-parameter]
- glpng.c: In function 'pngLoadF':
- glpng.c:385:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
- glpng.c: In function 'pngLoadRawF':
- glpng.c:280:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
- ld -r -o libglAW.a GLwMDrawA.o AW_window_ogl.o
- make[5]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL/glAW'
- ld -r -o libglpng_arb.a glpng.o
- make[5]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL/glpng'
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GL'
- -------------------------------------------------------------------------------- Make everything in SL
- make[5]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL'
- make[6]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/TREE_READ'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_TREE_READ -c TreeRead.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_TREE_READ -c TreeTools.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o TREE_READ.a TreeRead.o TreeTools.o
- make[6]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/TREE_READ'
- make[6]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/REGEXPR'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_REGEXPR -c RegExpr.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o REGEXPR.a RegExpr.o
- make[6]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/REGEXPR'
- make[6]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/AW_HELIX'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_AW_HELIX -c AW_helix.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o AW_HELIX.a AW_helix.o
- make[6]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/AW_HELIX'
- make[6]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/FILE_BUFFER'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_FILE_BUFFER -c FileBuffer.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o FILE_BUFFER.a FileBuffer.o
- make[6]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/FILE_BUFFER'
- make[6]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/HELIX'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_HELIX -c BI_helix.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o HELIX.a BI_helix.o
- make[6]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/HELIX'
- make[6]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/DB_SCANNER'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_DB_SCANNER -c db_scanner.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o DB_SCANNER.a db_scanner.o
- make[6]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/DB_SCANNER'
- make[6]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/TREE_WRITE'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_TREE_WRITE -c TreeWrite.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o TREE_WRITE.a TreeWrite.o
- make[6]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/TREE_WRITE'
- make[6]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/AW_NAME'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_AW_NAME -c AW_rename.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_AW_NAME -c AW_names_admin.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o AW_NAME.a AW_rename.o AW_names_admin.o
- make[6]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/AW_NAME'
- make[6]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/FAST_ALIGNER'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_FAST_ALIGNER -c fast_aligner.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_FAST_ALIGNER -c ClustalV.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- fast_aligner.cxx: In function 'const char* alignCompactedTo(AWTC_CompactedSubSequence*, const AWTC_FastSearchSequence*, int, GB_CSTR, long int, GBDATA*, GBDATA*, const AlignParams&)':
- fast_aligner.cxx:1254:31: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- fast_aligner.cxx:1254:84: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- fast_aligner.cxx: In function 'void AWTC_start_faligning(AW_window*, AW_CL)':
- fast_aligner.cxx:2368:58: warning: narrowing conversion of 'root->AW_root::awar(((const char*)"faligner/next_relatives"))->AW_awar::read_int()' from 'long int' to 'int' inside { } is ill-formed in C++11 [-Wnarrowing]
- fast_aligner.cxx:2369:53: warning: narrowing conversion of 'root->AW_root::awar(((const char*)"next_neighbours/oligo_len"))->AW_awar::read_int()' from 'long int' to 'int' inside { } is ill-formed in C++11 [-Wnarrowing]
- fast_aligner.cxx:2370:54: warning: narrowing conversion of 'root->AW_root::awar(((const char*)"next_neighbours/mismatches"))->AW_awar::read_int()' from 'long int' to 'int' inside { } is ill-formed in C++11 [-Wnarrowing]
- fast_aligner.cxx:2371:53: warning: narrowing conversion of 'root->AW_root::awar(((const char*)"next_neighbours/fast_mode"))->AW_awar::read_int()' from 'long int' to 'bool' inside { } is ill-formed in C++11 [-Wnarrowing]
- fast_aligner.cxx:2372:55: warning: narrowing conversion of 'root->AW_root::awar(((const char*)"next_neighbours/rel_matches"))->AW_awar::read_int()' from 'long int' to 'bool' inside { } is ill-formed in C++11 [-Wnarrowing]
- fast_aligner.cxx:2377:62: warning: narrowing conversion of 'root->AW_root::awar(((const char*)"faligner/show_gaps"))->AW_awar::read_int()' from 'long int' to 'bool' inside { } is ill-formed in C++11 [-Wnarrowing]
- ld -r -o FAST_ALIGNER.a fast_aligner.o ClustalV.o
- make[6]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL/FAST_ALIGNER'
- make[5]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/SL'
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make arbshared arbapplications help
- make[3]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make -C bin all
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin'
- find . -type l -exec rm {} \;
- -------------------------------------------------------------------------------- Building prototyper
- make AISC_MKPTPS/AISC_MKPTPS.dummy
- -------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- make[4]: Nothing to be done for `dummy.a'.
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- -------------------------------------------------------------------------------- Make everything in AISC
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC'
- make[4]: Nothing to be done for `dummy.a'.
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC'
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- -------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
- make[5]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- make[5]: Nothing to be done for `AISC_MKPTPS.a'.
- make[5]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AISC_MKPTPS'
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` .
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/bin'
- -------------------------------------------------------------------------------- Make everything in AWTI
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWTI'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWTI -c AWTI_import.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AWTI_import.cxx: In function 'void AWTC_import_go_cb(AW_window*)':
- AWTI_import.cxx:1174:16: error: 'sleep' was not declared in this scope
- make[4]: *** [AWTI_import.o] Error 1
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWTI'
- make[3]: *** [AWTI/AWTI.dummy] Error 1
- make[3]: *** Waiting for unfinished jobs....
- -------------------------------------------------------------------------------- Make everything in ARBDBPP
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDBPP'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adtsequence.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adt_edit.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adt_edit.cxx: In member function 'AD_ERR* ADT_SEQUENCE::show_edit_search(ADT_SEARCH*, ADT_EDIT*)':
- adt_edit.cxx:581:13: warning: variable 'seq_empty_var' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adtali.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adextended.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adseq.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adspecies.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adseq.cxx: In member function 'AD_ERR* AD_CONT::create(AD_SPECIES*, AD_ALI*)':
- adseq.cxx:1012:20: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- adseq.cxx:1012:84: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c admain.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adali.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c liste.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--export-dynamic -shared -o libARBDBPP.so adtsequence.o adt_edit.o adtali.o adextended.o adseq.o adspecies.o admain.o adali.o liste.o
- touch libARBDBPP.a
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDBPP'
- -------------------------------------------------------------------------------- Make everything in GENOM
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GENOM'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_interface.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_map.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_graphic.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- GEN_graphic.cxx:158:12: warning: unused parameter 'selected_range' [-Wunused-parameter]
- GEN_map.cxx: In function 'void gen_extract_gene_2_pseudoSpecies(GBDATA*, GBDATA*, EG2PS_data*)':
- GEN_map.cxx:882:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- GEN_map.cxx:882:93: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_gene.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_nds.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- GEN_nds.cxx:307:2: warning: #warning make this function more general like AWT_popup_select_species_field_window [-Wcpp]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_color_groups.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_translations.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c EXP_interface.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c EXP_main.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o GENOM.a GEN_interface.o GEN_map.o GEN_graphic.o GEN_gene.o GEN_nds.o GEN_color_groups.o GEN_translations.o EXP_interface.o EXP_main.o
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GENOM'
- -------------------------------------------------------------------------------- Make everything in MERGE
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/MERGE'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_checkfield.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_main.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_trees.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_alignment.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_species.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_extendeds.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_names.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_gene_species.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_configs.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_preserves.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o MERGE.a MG_checkfield.o MG_main.o MG_trees.o MG_alignment.o MG_species.o MG_extendeds.o MG_names.o MG_gene_species.o MG_configs.o MG_preserves.o
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/MERGE'
- -------------------------------------------------------------------------------- Make everything in GENOM_IMPORT
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GENOM_IMPORT'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c GenomeImport.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c Importer.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c DBwriter.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- DBwriter.cxx: In member function 'void DBwriter::writeSequence(const SequenceBuffer&)':
- DBwriter.cxx:226:23: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- DBwriter.cxx:226:76: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c SequenceBuffer.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c MetaInfo.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c Feature.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- SequenceBuffer.cxx: In member function 'void BaseCounter::checkOverallCounter() const':
- SequenceBuffer.cxx:55:67: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat]
- SequenceBuffer.cxx:55:67: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'size_t {aka long unsigned int}' [-Wformat]
- SequenceBuffer.cxx: In member function 'void BaseCounter::expectEqual(const BaseCounter&) const':
- SequenceBuffer.cxx:116:114: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat]
- SequenceBuffer.cxx:116:114: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'size_t {aka long unsigned int}' [-Wformat]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c Location.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c tools.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- -------------------- Checking GENOM_IMPORT.a
- Target 'GENOM_IMPORT.a' not found
- -> rebuilding GENOM_IMPORT.a (Wed Dec 31 23:59:59 1969)
- ld -r -o GENOM_IMPORT.a GenomeImport.o Importer.o DBwriter.o SequenceBuffer.o MetaInfo.o Feature.o Location.o tools.o
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/GENOM_IMPORT'
- -------------------------------------------------------------------------------- Make everything in WINDOW
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/WINDOW'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_position.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_Xm.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_at.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_button.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_click.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AW_button.cxx: In function 'void AW_variable_update_callback(Widget, XtPointer, XtPointer)':
- AW_button.cxx:199:37: warning: variable 'found' set but not used [-Wunused-but-set-variable]
- AW_button.cxx: In member function 'int AW_window::get_index_of_element(AW_selection_list*, const char*)':
- AW_button.cxx:1617:17: warning: variable 'found_index' set but not used [-Wunused-but-set-variable]
- AW_button.cxx: In function 'const char* detect_bitmap_size(const char*, int*, int*)':
- AW_button.cxx:398:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
- AW_button.cxx:417:51: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
- AW_button.cxx:418:51: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_debug.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_device.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AW_device.cxx: In member function 'int AW_device::text_overlay(int, const char*, long int, AW_pos, AW_pos, AW_pos, AW_bitset, AW_CL, AW_CL, AW_CL, AW_pos, AW_pos, int (*)(AW_device*, int, const char*, size_t, size_t, size_t, AW_pos, AW_pos, AW_pos, AW_pos, AW_CL, AW_CL, AW_CL))':
- AW_device.cxx:721:22: warning: variable 'yi' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_font_group.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_global_awars.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_nawar.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AW_nawar.cxx: In member function 'AW_awar* AW_root::awar_pointer(const char*, void*, AW_default)':
- AW_nawar.cxx:193:111: warning: passing NULL to non-pointer argument 4 of 'AW_awar::AW_awar(AW_VARIABLE_TYPE, const char*, const char*, double, AW_default, AW_root*)' [-Wconversion-null]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_preset.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AW_preset.cxx: In function 'void* AW_manage_GC(AW_window*, AW_device*, int, int, AW_GCM_AREA, void (*)(AW_window*, AW_CL, AW_CL), AW_CL, AW_CL, bool, const char*, ...)':
- AW_preset.cxx:613:18: warning: variable 'flag_no_color_selector' set but not used [-Wunused-but-set-variable]
- AW_preset.cxx:614:18: warning: variable 'flag_append_in_same_line' set but not used [-Wunused-but-set-variable]
- AW_preset.cxx: In function 'bool aw_insert_gcs(AW_root*, AW_window_simple*, aw_gc_manager*, bool)':
- AW_preset.cxx:786:17: warning: variable 'first' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_print.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_question.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_size.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_status.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_window.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xfig.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AW_status.cxx: In function 'int aw_status_read_int(int, int)':
- AW_status.cxx:281:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
- AW_status.cxx: In function 'void aw_help_edit_help(AW_window*)':
- AW_status.cxx:1746:25: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
- AW_window.cxx: In member function 'void AW_window::insert_separator()':
- AW_window.cxx:3002:12: warning: variable 'separator' set but not used [-Wunused-but-set-variable]
- AW_window.cxx: In member function 'void AW_window::insert_separator_help()':
- AW_window.cxx:3011:12: warning: variable 'separator' set but not used [-Wunused-but-set-variable]
- AW_status.cxx: In function 'void aw_status_timer_event(AW_root*, AW_CL, AW_CL)':
- AW_status.cxx:419:28: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xfigfont.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xfont.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xkey.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_window_Xm_interface.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--export-dynamic -shared -o libAW.so AW_position.o AW_Xm.o AW_at.o AW_button.o AW_click.o AW_debug.o AW_device.o AW_font_group.o AW_global_awars.o AW_nawar.o AW_preset.o AW_print.o AW_question.o AW_size.o AW_status.o AW_window.o AW_xfig.o AW_xfigfont.o AW_xfont.o AW_xkey.o AW_window_Xm_interface.o
- touch libAW.a
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/WINDOW'
- -------------------------------------------------------------------------------- Make everything in ARBDBS
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDBS'
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adsort.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adlang1.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adstring.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admatch.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- admatch.c: In function 'GBS_string_eval':
- admatch.c:763:37: warning: ignoring return value of 'gbs_build_replace_string', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c arbdb.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- arbdb.c: In function 'GB_copy_with_protection':
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c: In function 'gb_remove_callback':
- arbdb.c:2239:13: warning: variable 'removed' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_core.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admath.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adoptimize.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ad_core.c: In function 'ad_use':
- ad_core.c:11:17: warning: parameter 'dummy' set but not used [-Wunused-but-set-parameter]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adsystem.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adsystem.c: In function 'gb_load_single_key_data':
- adsystem.c:141:101: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- adsystem.c:159:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- adsystem.c:160:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adindex.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adperl.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adlink.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adsocket.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adsocket.c: In function 'GB_get_full_path':
- adsocket.c:1256:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result]
- adsocket.c:1260:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adcomm.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adhash.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adcomm.c: In function 'gbcms_write_updated':
- adcomm.c:303:23: warning: variable 'hs' set but not used [-Wunused-but-set-variable]
- adcomm.c: In function 'gbcms_talking_init_transaction':
- adcomm.c:533:14: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
- adcomm.c: In function 'gbcm_read_bin':
- adcomm.c:1231:27: warning: variable 'flags3' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adquery.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_save_load.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adquery.c: In function 'gb_search':
- adquery.c:449:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
- adquery.c:455:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
- adquery.c:526:31: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
- adquery.c: In function 'GB_command_interpreter':
- adquery.c:861:19: warning: variable 'len' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adcompr.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ad_save_load.c: In function 'gb_write_bin_rek':
- ad_save_load.c:799:13: warning: null argument where non-null required (argument 1) [-Wnonnull]
- ad_save_load.c: In function 'GB_save_as':
- ad_save_load.c:1079:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c: In function 'GB_save_quick_as':
- ad_save_load.c:1126:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1148:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1173:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1184:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c: In function 'GB_save_quick':
- ad_save_load.c:1213:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1234:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1267:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c: In function 'gb_check_saveable':
- ad_save_load.c:1307:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1312:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admalloc.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_load.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ad_load.c: In function 'GB_login':
- ad_load.c:1380:34: warning: ignoring return value of 'gb_scan_directory', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admap.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- admap.c: In function 'gb_save_mapfile':
- admap.c:636:9: warning: variable 'writeOffset' set but not used [-Wunused-but-set-variable]
- admap.c:635:10: warning: variable 'calcOffset' set but not used [-Wunused-but-set-variable]
- admap.c: In function 'gb_is_valid_mapfile':
- admap.c:722:14: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adTest.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adTest.c: In function 'testData':
- adTest.c:36:9: warning: variable 'err' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtune.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adGene.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtcp.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adhashtools.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adExperiment.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtools.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adseqcompr.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adtools.c: In function 'GBT_check_arb_file':
- adtools.c:74:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtables.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adRevCompl.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adChangeKey.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adali.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adcolumns.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adali.c: In function 'GBT_create_sequence_data':
- adali.c:597:5: warning: 'GBT_add_data' is deprecated (declared at adali.c:568) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtree.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adname.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c aditem.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c arbdbpp.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_config.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ld -r -o libARBDB.a adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDBS'
- -------------------------------------------------------------------------------- Make everything in ARBDB2
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDB2'
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adsort.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adlang1.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adstring.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admatch.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- admatch.c: In function 'GBS_string_eval':
- admatch.c:763:37: warning: ignoring return value of 'gbs_build_replace_string', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c arbdb.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_core.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admath.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ad_core.c: In function 'ad_use':
- ad_core.c:11:17: warning: parameter 'dummy' set but not used [-Wunused-but-set-parameter]
- arbdb.c: In function 'GB_copy_with_protection':
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c: In function 'gb_remove_callback':
- arbdb.c:2239:13: warning: variable 'removed' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adoptimize.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adsystem.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adsystem.c: In function 'gb_load_single_key_data':
- adsystem.c:141:101: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- adsystem.c:159:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- adsystem.c:160:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adindex.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adperl.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adlink.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adsocket.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adsocket.c: In function 'GB_get_full_path':
- adsocket.c:1256:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result]
- adsocket.c:1260:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adcomm.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adhash.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adquery.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adcomm.c: In function 'gbcms_write_updated':
- adcomm.c:303:23: warning: variable 'hs' set but not used [-Wunused-but-set-variable]
- adcomm.c: In function 'gbcms_talking_init_transaction':
- adcomm.c:533:14: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_save_load.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adcomm.c: In function 'gbcm_read_bin':
- adcomm.c:1231:27: warning: variable 'flags3' set but not used [-Wunused-but-set-variable]
- adquery.c: In function 'gb_search':
- adquery.c:449:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
- adquery.c:455:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
- adquery.c:526:31: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
- adquery.c: In function 'GB_command_interpreter':
- adquery.c:861:19: warning: variable 'len' set but not used [-Wunused-but-set-variable]
- ad_save_load.c: In function 'gb_write_bin_rek':
- ad_save_load.c:799:13: warning: null argument where non-null required (argument 1) [-Wnonnull]
- ad_save_load.c: In function 'GB_save_as':
- ad_save_load.c:1079:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c: In function 'GB_save_quick_as':
- ad_save_load.c:1126:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1148:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1173:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1184:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c: In function 'GB_save_quick':
- ad_save_load.c:1213:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1234:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1267:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c: In function 'gb_check_saveable':
- ad_save_load.c:1307:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1312:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adcompr.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admalloc.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_load.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ad_load.c: In function 'GB_login':
- ad_load.c:1380:34: warning: ignoring return value of 'gb_scan_directory', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admap.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- admap.c: In function 'gb_save_mapfile':
- admap.c:636:9: warning: variable 'writeOffset' set but not used [-Wunused-but-set-variable]
- admap.c:635:10: warning: variable 'calcOffset' set but not used [-Wunused-but-set-variable]
- admap.c: In function 'gb_is_valid_mapfile':
- admap.c:722:14: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adTest.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adTest.c: In function 'testData':
- adTest.c:36:9: warning: variable 'err' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtune.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adGene.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtcp.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adhashtools.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adExperiment.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtools.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adtools.c: In function 'GBT_check_arb_file':
- adtools.c:74:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adseqcompr.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtables.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adRevCompl.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adChangeKey.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adali.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adcolumns.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtree.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adali.c: In function 'GBT_create_sequence_data':
- adali.c:597:5: warning: 'GBT_add_data' is deprecated (declared at adali.c:568) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adname.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c aditem.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_config.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--export-dynamic -shared -o libARBDB.so adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o ad_config.o
- touch libARBDB.a
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDB2'
- -------------------------------------------------------------------------------- Make everything in ARBDB
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDB'
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adsort.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adlang1.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adstring.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admatch.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c arbdb.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- admatch.c: In function 'GBS_string_eval':
- admatch.c:763:37: warning: ignoring return value of 'gbs_build_replace_string', declared with attribute warn_unused_result [-Wunused-result]
- arbdb.c: In function 'GB_copy_with_protection':
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
- arbdb.c: In function 'gb_remove_callback':
- arbdb.c:2239:13: warning: variable 'removed' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_core.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ad_core.c: In function 'ad_use':
- ad_core.c:11:17: warning: parameter 'dummy' set but not used [-Wunused-but-set-parameter]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admath.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adoptimize.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adsystem.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adsystem.c: In function 'gb_load_single_key_data':
- adsystem.c:141:101: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- adsystem.c:159:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- adsystem.c:160:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adindex.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adperl.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adlink.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adsocket.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adsocket.c: In function 'GB_get_full_path':
- adsocket.c:1256:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result]
- adsocket.c:1260:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adcomm.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adcomm.c: In function 'gbcms_write_updated':
- adcomm.c:303:23: warning: variable 'hs' set but not used [-Wunused-but-set-variable]
- adcomm.c: In function 'gbcms_talking_init_transaction':
- adcomm.c:533:14: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
- adcomm.c: In function 'gbcm_read_bin':
- adcomm.c:1231:27: warning: variable 'flags3' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adhash.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adquery.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_save_load.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adquery.c: In function 'gb_search':
- adquery.c:449:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
- adquery.c:455:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
- adquery.c:526:31: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
- adquery.c: In function 'GB_command_interpreter':
- adquery.c:861:19: warning: variable 'len' set but not used [-Wunused-but-set-variable]
- ad_save_load.c: In function 'gb_write_bin_rek':
- ad_save_load.c:799:13: warning: null argument where non-null required (argument 1) [-Wnonnull]
- ad_save_load.c: In function 'GB_save_as':
- ad_save_load.c:1079:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c: In function 'GB_save_quick_as':
- ad_save_load.c:1126:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1148:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1173:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1184:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c: In function 'GB_save_quick':
- ad_save_load.c:1213:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1234:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1267:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c: In function 'gb_check_saveable':
- ad_save_load.c:1307:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- ad_save_load.c:1312:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adcompr.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admalloc.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_load.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admap.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adTest.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ad_load.c: In function 'GB_login':
- ad_load.c:1380:34: warning: ignoring return value of 'gb_scan_directory', declared with attribute warn_unused_result [-Wunused-result]
- admap.c: In function 'gb_save_mapfile':
- admap.c:636:9: warning: variable 'writeOffset' set but not used [-Wunused-but-set-variable]
- admap.c:635:10: warning: variable 'calcOffset' set but not used [-Wunused-but-set-variable]
- adTest.c: In function 'testData':
- adTest.c:36:9: warning: variable 'err' set but not used [-Wunused-but-set-variable]
- admap.c: In function 'gb_is_valid_mapfile':
- admap.c:722:14: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtune.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adGene.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtcp.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adhashtools.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adExperiment.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtools.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adseqcompr.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtables.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adtools.c: In function 'GBT_check_arb_file':
- adtools.c:74:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adRevCompl.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adChangeKey.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adali.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adcolumns.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtree.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adname.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c aditem.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c arbdbpp.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_config.c -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- adali.c: In function 'GBT_create_sequence_data':
- adali.c:597:5: warning: 'GBT_add_data' is deprecated (declared at adali.c:568) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--export-dynamic -shared -o libARBDB.so adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o
- touch libARBDB.a
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/ARBDB'
- -------------------------------------------------------------------------------- Make everything in NTREE
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NTREE'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_consensus.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_conservProfile2Gnuplot.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AP_consensus.cxx: In function 'const char* CON_export(char*, char*, int**, char*, int*, char*, int, long int, long int, int, int, int, double, double, int, int)':
- AP_consensus.cxx:409:23: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:409:72: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:411:25: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:411:75: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:465:28: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:465:80: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx: In function 'void CON_calc_max_freq_cb(AW_window*)':
- AP_consensus.cxx:962:27: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:962:76: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:963:27: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:963:76: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:966:27: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_consensus.cxx:966:77: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_conservProfile2Gnuplot.cxx: In function 'void AP_conservProfile2Gnuplot_callback(AW_window*)':
- AP_conservProfile2Gnuplot.cxx:58:42: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_cprofile.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_csp_2_gnuplot.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_pos_var_pars.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AP_csp_2_gnuplot.cxx: In function 'char* get_overlay_files(AW_root*, const char*, const char*&)':
- AP_csp_2_gnuplot.cxx:92:50: warning: 'const char* GB_get_error()' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
- AP_csp_2_gnuplot.cxx:92:63: warning: 'const char* GB_get_error()' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
- AP_csp_2_gnuplot.cxx:100:55: warning: 'const char* GB_get_error()' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
- AP_csp_2_gnuplot.cxx:100:68: warning: 'const char* GB_get_error()' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
- AP_csp_2_gnuplot.cxx: In function 'void AP_csp_2_gnuplot_cb(AW_window*, AW_CL, AW_CL)':
- AP_csp_2_gnuplot.cxx:388:62: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
- AP_cprofile.cxx: In function 'void CPRO_workupstatistic(unsigned char)':
- AP_cprofile.cxx:234:17: warning: variable 'colmax' set but not used [-Wunused-but-set-variable]
- AP_cprofile.cxx: In function 'void CPRO_memrequirement_cb(AW_root*)':
- AP_cprofile.cxx:663:10: warning: variable 'versus' set but not used [-Wunused-but-set-variable]
- AP_cprofile.cxx: In function 'void CPRO_condense_cb(AW_window*, AW_CL)':
- AP_cprofile.cxx:1420:14: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_cprofile.cxx:1420:62: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_cprofile.cxx:1423:23: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- AP_cprofile.cxx:1423:72: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_cb.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- NT_cb.cxx: In function 'void NT_system_cb2(AW_window*, AW_CL, AW_CL)':
- NT_cb.cxx:128:35: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_concatenate.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_dbrepair.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_edconf.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_extern.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_import.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_ins_col.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_join.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_main.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- NT_concatenate.cxx: In function 'const char* displayAlignmentInfo(GBDATA*, GB_ERROR, char*, char*)':
- NT_concatenate.cxx:310:37: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- NT_concatenate.cxx:310:93: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- NT_concatenate.cxx: In function 'void concatenateAlignments(AW_window*)':
- NT_concatenate.cxx:415:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- NT_concatenate.cxx:415:95: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- NT_concatenate.cxx: In function 'GBDATA* concatenateFieldsCreateNewSpecies(AW_window*, GBDATA*, speciesConcatenateList)':
- NT_concatenate.cxx:664:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- NT_concatenate.cxx:664:114: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- NT_import.cxx: In function 'void NT_import_sequences(AW_window*, AW_CL, AW_CL)':
- NT_import.cxx:52:30: warning: variable 'gb_merge_is_genom_db' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_sort.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- NT_main.cxx: In function 'int main(int, char**)':
- NT_main.cxx:399:50: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_trackAliChanges.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_validManual.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_validNameParser.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- NT_validNameParser.cxx: In function 'validNames::Desco validNames::determineType(const string&)':
- NT_validNameParser.cxx:89:14: warning: variable 'isSee' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_validNames.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_ali.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_ext.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_spec.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_transpro.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_trees.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- ad_spec.cxx: In function 'void ad_field_convert_commit_cb(AW_window*, AW_CL)':
- ad_spec.cxx:729:29: warning: unused variable 'selector' [-Wunused-variable]
- ad_transpro.cxx: In function 'const char* arb_r2a(GBDATA*, bool, bool, int, bool, const char*, const char*)':
- ad_transpro.cxx:159:48: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- ad_transpro.cxx:159:100: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
- ad_trees.cxx: In function 'char* readXmlTree(char*)':
- ad_trees.cxx:418:44: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
- ad_trees.cxx:422:44: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
- -------------------- Checking NTREE.a
- Target 'NTREE.a' not found
- -> rebuilding NTREE.a (Wed Dec 31 23:59:59 1969)
- ld -r -o NTREE.a AP_consensus.o AP_conservProfile2Gnuplot.o AP_cprofile.o AP_csp_2_gnuplot.o AP_pos_var_pars.o NT_cb.o NT_concatenate.o NT_dbrepair.o NT_edconf.o NT_extern.o NT_import.o NT_ins_col.o NT_join.o NT_main.o NT_sort.o NT_trackAliChanges.o NT_validManual.o NT_validNameParser.o NT_validNames.o ad_ali.o ad_ext.o ad_spec.o ad_transpro.o ad_trees.o
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/NTREE'
- -------------------------------------------------------------------------------- Make everything in AWT
- make[4]: Entering directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWT'
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_input_mask.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_hotkeys.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AWT_input_mask.cxx: In function 'void create_new_mask_cb(AW_window*)':
- AWT_input_mask.cxx:2242:18: warning: variable 'closeWindow' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_www.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tables.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_irstree.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_asciiprint.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AWT_tables.cxx: In function 'void ad_table_field_reorder_cb(AW_window*, awt_table*)':
- AWT_tables.cxx:25:14: warning: variable 'warning' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_map_key.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tree_cmp.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_colors.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_pro_a_nucs.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_csp.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_canvas.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_dtree.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tree.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tree_cb.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_nei.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_filter.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_sel_boxes.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_canio.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_nds.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_query_and_functions.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_file_selection.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_preset.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_dna.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AWT_canio.cxx: In function 'void AWT_print_tree_to_file_xfig(AW_window*, AW_CL)':
- AWT_canio.cxx:268:53: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_protein.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_simple_pro.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_codon_table.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_iupac.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_config_manager.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_advice.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AWT_codon_table.cxx: In function 'bool AWT_is_codon(char, const char*, const AWT_allowedCode&, AWT_allowedCode&, const char**)':
- AWT_codon_table.cxx:518:18: warning: variable 'correct_disallowed_translation' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_db_browser.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_attributes.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_changekey.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_item_sel_list.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- AWT_config_manager.cxx: In function 'void AWT_start_config_manager(AW_window*, AW_CL)':
- AWT_config_manager.cxx:119:24: warning: variable 'reopen' set but not used [-Wunused-but-set-variable]
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_macro.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DARB_64 -DLINUX -rdynamic -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_translate.cxx -I. -I/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/INCLUDE -I/usr/X11R6/include
- x86_64-pc-linux-gnu-g++ -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--export-dynamic -shared -o libAWT.so AWT_input_mask.o AWT_hotkeys.o AWT_www.o AWT_tables.o AWT_irstree.o AWT_asciiprint.o AWT_map_key.o AWT_tree_cmp.o AWT_seq_colors.o AWT_pro_a_nucs.o AWT_csp.o AWT_canvas.o AWT_dtree.o AWT_tree.o AWT_tree_cb.o AWT_nei.o AWT_filter.o AWT_sel_boxes.o AWT_canio.o AWT_nds.o AWT_query_and_functions.o AWT_file_selection.o AWT_preset.o AWT_seq_dna.o AWT_seq_protein.o AWT_seq_simple_pro.o AWT_codon_table.o AWT_iupac.o AWT_config_manager.o AWT_advice.o AWT_db_browser.o AWT_attributes.o AWT_changekey.o AWT_item_sel_list.o AWT_macro.o AWT_translate.o
- touch libAWT.a
- make[4]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2/AWT'
- make[3]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make[2]: *** [arb] Error 2
- make[2]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make[1]: *** [all] Error 2
- make[1]: Leaving directory `/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- make: *** [rebuild] Error 2
- * ERROR: sci-biology/arb-5.2 failed (compile phase):
- * emake failed
- *
- * If you need support, post the output of `emerge --info '=sci-biology/arb-5.2'`,
- * the complete build log and the output of `emerge -pqv '=sci-biology/arb-5.2'`.
- * The complete build log is located at '/var/log/portage/sci-biology:arb-5.2:20120813-044524.log'.
- * For convenience, a symlink to the build log is located at '/tmp/portage/sci-biology/arb-5.2/temp/build.log'.
- * The ebuild environment file is located at '/tmp/portage/sci-biology/arb-5.2/temp/environment'.
- * Working directory: '/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'
- * S: '/tmp/portage/sci-biology/arb-5.2/work/arb-5.2'