1. * Package: dev-python/pyamg-2.0.4
2. * Repository: gentoo
3. * Maintainer: sci@gentoo.org
4. * USE: amd64 elibc_glibc kernel_linux multilib test userland_GNU
5. * FEATURES: sandbox test userpriv usersandbox
6. >>> Unpacking source...
7. >>> Unpacking pyamg-2.0.4.tar.gz to /tmp/portage/dev-python/pyamg-2.0.4/work
8. >>> Source unpacked in /tmp/portage/dev-python/pyamg-2.0.4/work
9. >>> Preparing source in /tmp/portage/dev-python/pyamg-2.0.4/work/pyamg ...
10. >>> Source prepared.
11. >>> Configuring source in /tmp/portage/dev-python/pyamg-2.0.4/work/pyamg ...
12. >>> Source configured.
13. >>> Compiling source in /tmp/portage/dev-python/pyamg-2.0.4/work/pyamg ...
14. * Building of dev-python/pyamg-2.0.4 with CPython 2.7...
15. python2.7 setup.py build -b build-2.7
16. running build
17. running config_cc
18. unifing config_cc, config, build_clib, build_ext, build commands --compiler options
19. running config_fc
20. unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
21. running build_src
22. build_src
23. building py_modules sources
24. creating build-2.7
25. creating build-2.7/src.linux-x86_64-2.7
26. creating build-2.7/src.linux-x86_64-2.7/pyamg
27. building extension "pyamg.amg_core._amg_core" sources
28. building data_files sources
29. build_src: building npy-pkg config files
30. running build_py
31. creating build-2.7/lib.linux-x86_64-2.7
32. creating build-2.7/lib.linux-x86_64-2.7/pyamg
33. copying pyamg/version.py -> build-2.7/lib.linux-x86_64-2.7/pyamg
34. copying pyamg/strength.py -> build-2.7/lib.linux-x86_64-2.7/pyamg
35. copying pyamg/setup.py -> build-2.7/lib.linux-x86_64-2.7/pyamg
36. copying pyamg/multilevel.py -> build-2.7/lib.linux-x86_64-2.7/pyamg
37. copying pyamg/info.py -> build-2.7/lib.linux-x86_64-2.7/pyamg
38. copying pyamg/graph.py -> build-2.7/lib.linux-x86_64-2.7/pyamg
39. copying pyamg/blackbox.py -> build-2.7/lib.linux-x86_64-2.7/pyamg
40. copying pyamg/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg
41. copying build-2.7/src.linux-x86_64-2.7/pyamg/__config__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg
42. creating build-2.7/lib.linux-x86_64-2.7/pyamg/aggregation
43. copying pyamg/aggregation/tentative.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/aggregation
44. copying pyamg/aggregation/smooth.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/aggregation
45. copying pyamg/aggregation/setup.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/aggregation
46. copying pyamg/aggregation/aggregation.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/aggregation
47. copying pyamg/aggregation/aggregate.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/aggregation
48. copying pyamg/aggregation/adaptive.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/aggregation
49. copying pyamg/aggregation/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/aggregation
50. creating build-2.7/lib.linux-x86_64-2.7/pyamg/classical
51. copying pyamg/classical/split.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/classical
52. copying pyamg/classical/setup.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/classical
53. copying pyamg/classical/interpolate.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/classical
54. copying pyamg/classical/cr.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/classical
55. copying pyamg/classical/classical.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/classical
56. copying pyamg/classical/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/classical
57. creating build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
58. copying pyamg/gallery/stencil.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
59. copying pyamg/gallery/setup.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
60. copying pyamg/gallery/random_sparse.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
61. copying pyamg/gallery/mesh.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
62. copying pyamg/gallery/laplacian.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
63. copying pyamg/gallery/info.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
64. copying pyamg/gallery/example.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
65. copying pyamg/gallery/elasticity.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
66. copying pyamg/gallery/diffusion.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
67. copying pyamg/gallery/demo.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
68. copying pyamg/gallery/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/gallery
69. creating build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
70. copying pyamg/krylov/setup.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
71. copying pyamg/krylov/info.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
72. copying pyamg/krylov/_steepest_descent.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
73. copying pyamg/krylov/_minimal_residual.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
74. copying pyamg/krylov/_gmres_mgs.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
75. copying pyamg/krylov/_gmres_householder.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
76. copying pyamg/krylov/_gmres.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
77. copying pyamg/krylov/_fgmres.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
78. copying pyamg/krylov/_cr.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
79. copying pyamg/krylov/_cgnr.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
80. copying pyamg/krylov/_cgne.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
81. copying pyamg/krylov/_cg.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
82. copying pyamg/krylov/_bicgstab.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
83. copying pyamg/krylov/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/krylov
84. creating build-2.7/lib.linux-x86_64-2.7/pyamg/amg_core
85. copying pyamg/amg_core/setup.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/amg_core
86. copying pyamg/amg_core/amg_core.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/amg_core
87. copying pyamg/amg_core/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/amg_core
88. creating build-2.7/lib.linux-x86_64-2.7/pyamg/relaxation
89. copying pyamg/relaxation/smoothing.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/relaxation
90. copying pyamg/relaxation/setup.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/relaxation
91. copying pyamg/relaxation/relaxation.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/relaxation
92. copying pyamg/relaxation/info.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/relaxation
93. copying pyamg/relaxation/chebyshev.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/relaxation
94. copying pyamg/relaxation/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/relaxation
95. creating build-2.7/lib.linux-x86_64-2.7/pyamg/testing
96. copying pyamg/testing/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/testing
97. creating build-2.7/lib.linux-x86_64-2.7/pyamg/util
98. copying pyamg/util/utils.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/util
99. copying pyamg/util/setup.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/util
100. copying pyamg/util/linalg.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/util
101. copying pyamg/util/info.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/util
102. copying pyamg/util/BSR_utils.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/util
103. copying pyamg/util/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/util
104. creating build-2.7/lib.linux-x86_64-2.7/pyamg/vis
105. copying pyamg/vis/vtk_writer.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/vis
106. copying pyamg/vis/vis_coarse.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/vis
107. copying pyamg/vis/setup.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/vis
108. copying pyamg/vis/info.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/vis
109. copying pyamg/vis/__init__.py -> build-2.7/lib.linux-x86_64-2.7/pyamg/vis
110. warning: build_py: byte-compiling is disabled, skipping.
112. running build_ext
113. customize UnixCCompiler
114. customize UnixCCompiler using build_ext
115. customize UnixCCompiler
116. customize UnixCCompiler using build_ext
117. building 'pyamg.amg_core._amg_core' extension
118. compiling C++ sources
119. C compiler: x86_64-pc-linux-gnu-g++ -pthread -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC
121. creating build-2.7/temp.linux-x86_64-2.7
122. creating build-2.7/temp.linux-x86_64-2.7/pyamg
123. creating build-2.7/temp.linux-x86_64-2.7/pyamg/amg_core
124. compile options: '-D__STDC_FORMAT_MACROS=1 -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
125. x86_64-pc-linux-gnu-g++: pyamg/amg_core/amg_core_wrap.cxx
126. pyamg/amg_core/amg_core_wrap.cxx: In function 'void SWIG_Python_AddErrorMsg(const char*)':
127. pyamg/amg_core/amg_core_wrap.cxx:870:42: warning: format not a string literal and no format arguments [-Wformat-security]
128. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
129. pyamg/amg_core/ruge_stuben.h: In instantiation of 'void cljp_naive_splitting(I, const I*, const I*, const I*, const I*, I*, I) [with I = int]':
130. pyamg/amg_core/amg_core_wrap.cxx:4478:124: required from here
131. pyamg/amg_core/ruge_stuben.h:291:5: error: 'vertex_coloring_mis' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
132. In file included from pyamg/amg_core/amg_core_wrap.cxx:2571:0:
133. pyamg/amg_core/graph.h:171:3: note: 'template<class I, class T> T vertex_coloring_mis(I, const I*, const I*, T*)' declared here, later in the translation unit
134. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
135. pyamg/amg_core/ruge_stuben.h: In instantiation of 'void classical_strength_of_connection(I, F, const I*, const I*, const T*, I*, I*, T*) [with I = int; T = float; F = float]':
136. pyamg/amg_core/amg_core_wrap.cxx:8771:140: required from here
137. pyamg/amg_core/ruge_stuben.h:58:17: error: 'mynorm' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
138. In file included from pyamg/amg_core/smoothed_aggregation.h:12:0,
139. from pyamg/amg_core/amg_core_wrap.cxx:2569:
140. pyamg/amg_core/linalg.h:72:15: note: 'double mynorm(const npy_cdouble_wrapper&)' declared here, later in the translation unit
141. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
142. pyamg/amg_core/ruge_stuben.h:64:38: error: 'mynorm' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
143. In file included from pyamg/amg_core/smoothed_aggregation.h:12:0,
144. from pyamg/amg_core/amg_core_wrap.cxx:2569:
145. pyamg/amg_core/linalg.h:72:15: note: 'double mynorm(const npy_cdouble_wrapper&)' declared here, later in the translation unit
146. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
147. pyamg/amg_core/ruge_stuben.h: In instantiation of 'void classical_strength_of_connection(I, F, const I*, const I*, const T*, I*, I*, T*) [with I = int; T = double; F = double]':
148. pyamg/amg_core/amg_core_wrap.cxx:8897:143: required from here
149. pyamg/amg_core/ruge_stuben.h:58:17: error: 'mynorm' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
150. In file included from pyamg/amg_core/smoothed_aggregation.h:12:0,
151. from pyamg/amg_core/amg_core_wrap.cxx:2569:
152. pyamg/amg_core/linalg.h:72:15: note: 'double mynorm(const npy_cdouble_wrapper&)' declared here, later in the translation unit
153. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
154. pyamg/amg_core/ruge_stuben.h:64:38: error: 'mynorm' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
155. In file included from pyamg/amg_core/smoothed_aggregation.h:12:0,
156. from pyamg/amg_core/amg_core_wrap.cxx:2569:
157. pyamg/amg_core/linalg.h:72:15: note: 'double mynorm(const npy_cdouble_wrapper&)' declared here, later in the translation unit
158. pyamg/amg_core/amg_core_wrap.cxx: In function 'void SWIG_Python_AddErrorMsg(const char*)':
159. pyamg/amg_core/amg_core_wrap.cxx:870:42: warning: format not a string literal and no format arguments [-Wformat-security]
160. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
161. pyamg/amg_core/ruge_stuben.h: In instantiation of 'void cljp_naive_splitting(I, const I*, const I*, const I*, const I*, I*, I) [with I = int]':
162. pyamg/amg_core/amg_core_wrap.cxx:4478:124: required from here
163. pyamg/amg_core/ruge_stuben.h:291:5: error: 'vertex_coloring_mis' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
164. In file included from pyamg/amg_core/amg_core_wrap.cxx:2571:0:
165. pyamg/amg_core/graph.h:171:3: note: 'template<class I, class T> T vertex_coloring_mis(I, const I*, const I*, T*)' declared here, later in the translation unit
166. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
167. pyamg/amg_core/ruge_stuben.h: In instantiation of 'void classical_strength_of_connection(I, F, const I*, const I*, const T*, I*, I*, T*) [with I = int; T = float; F = float]':
168. pyamg/amg_core/amg_core_wrap.cxx:8771:140: required from here
169. pyamg/amg_core/ruge_stuben.h:58:17: error: 'mynorm' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
170. In file included from pyamg/amg_core/smoothed_aggregation.h:12:0,
171. from pyamg/amg_core/amg_core_wrap.cxx:2569:
172. pyamg/amg_core/linalg.h:72:15: note: 'double mynorm(const npy_cdouble_wrapper&)' declared here, later in the translation unit
173. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
174. pyamg/amg_core/ruge_stuben.h:64:38: error: 'mynorm' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
175. In file included from pyamg/amg_core/smoothed_aggregation.h:12:0,
176. from pyamg/amg_core/amg_core_wrap.cxx:2569:
177. pyamg/amg_core/linalg.h:72:15: note: 'double mynorm(const npy_cdouble_wrapper&)' declared here, later in the translation unit
178. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
179. pyamg/amg_core/ruge_stuben.h: In instantiation of 'void classical_strength_of_connection(I, F, const I*, const I*, const T*, I*, I*, T*) [with I = int; T = double; F = double]':
180. pyamg/amg_core/amg_core_wrap.cxx:8897:143: required from here
181. pyamg/amg_core/ruge_stuben.h:58:17: error: 'mynorm' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
182. In file included from pyamg/amg_core/smoothed_aggregation.h:12:0,
183. from pyamg/amg_core/amg_core_wrap.cxx:2569:
184. pyamg/amg_core/linalg.h:72:15: note: 'double mynorm(const npy_cdouble_wrapper&)' declared here, later in the translation unit
185. In file included from pyamg/amg_core/amg_core_wrap.cxx:2568:0:
186. pyamg/amg_core/ruge_stuben.h:64:38: error: 'mynorm' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
187. In file included from pyamg/amg_core/smoothed_aggregation.h:12:0,
188. from pyamg/amg_core/amg_core_wrap.cxx:2569:
189. pyamg/amg_core/linalg.h:72:15: note: 'double mynorm(const npy_cdouble_wrapper&)' declared here, later in the translation unit
190. error: Command "x86_64-pc-linux-gnu-g++ -pthread -O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches -fPIC -D__STDC_FORMAT_MACROS=1 -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pyamg/amg_core/amg_core_wrap.cxx -o build-2.7/temp.linux-x86_64-2.7/pyamg/amg_core/amg_core_wrap.o" failed with exit status 1
191. * ERROR: dev-python/pyamg-2.0.4 failed (compile phase):
192. * Building failed with CPython 2.7 in distutils_building() function
193. *
194. * Call stack:
195. * ebuild.sh, line 85: Called src_compile
196. * environment, line 5196: Called distutils_src_compile
197. * environment, line 1349: Called python_execute_function 'distutils_building'
198. * environment, line 3580: Called die
199. * The specific snippet of code:
200. * die "${failure_message}";
201. *
202. * If you need support, post the output of `emerge --info '=dev-python/pyamg-2.0.4'`,
203. * the complete build log and the output of `emerge -pqv '=dev-python/pyamg-2.0.4'`.
204. sed: couldn't open temporary file /etc/portage/package.mask/sedL2aYRR: Permission denied